Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32086
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family...    28   3.2  
At5g39020.1 68418.m04722 protein kinase family protein contains ...    27   5.7  
At5g67200.1 68418.m08471 leucine-rich repeat transmembrane prote...    27   7.5  
At4g02630.1 68417.m00357 protein kinase family protein contains ...    27   7.5  
At4g12280.1 68417.m01946 copper amine oxidase family protein con...    27   9.9  

>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 615

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  KKNFSNRSSSFGAYSKQTNKQIFPLYNISIDYRN 132
           K   S+ SS    Y K +  Q++  +NIS DYR+
Sbjct: 566 KLTASDHSSLLFEYKKSSTGQVYDSFNISRDYRD 599


>At5g39020.1 68418.m04722 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 813

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 135 VNGNFVS*KYGIRPRSQISKARYSRALRFRMFLNSNSYNFNSTPACIFMKQFFH 296
           VN +F S       ++ +S+  Y +A   R+F +  +Y+F  TP  IF++ +F+
Sbjct: 60  VNASFTS--EASYQKAGVSRIPYMKA---RIFRSEFTYSFPVTPGSIFLRLYFY 108


>At5g67200.1 68418.m08471 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 669

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
 Frame = +1

Query: 64  GAYSKQTNKQIFPLYNISIDYRNS*MAISLVRNTAFALDLKSLRLDIHERCVSGCF*ILI 243
           G +S  T  ++  L  +S++  NS      + + +  ++LKSL L  ++   SG F   I
Sbjct: 86  GYFSSATLSRLDQLRVLSLE-NNS--LFGPIPDLSHLVNLKSLFLSRNQ--FSGAFPPSI 140

Query: 244 ----RIILIQHPHAFL*NNFFTSIAFEHTLLSRLTNLNFLSNNCYR*VIFFLAISYDSSF 411
               R++++   H    NNF  SI  E   L RLT+LN L  N +   +  L  S+ +SF
Sbjct: 141 LSLHRLMILSISH----NNFSGSIPSEINALDRLTSLN-LDFNRFNGTLPSLNQSFLTSF 195

Query: 412 N 414
           N
Sbjct: 196 N 196


>At4g02630.1 68417.m00357 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 492

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 444 LCFQFQASNPVKA*IIRNSQEENHLSITVIRKEIQICQP 328
           L F ++ SN  K+  + +S + NH  + V+ KEIQ  +P
Sbjct: 43  LWFIYRRSNKNKS--LESSSKSNHTIVPVVSKEIQEIRP 79


>At4g12280.1 68417.m01946 copper amine oxidase family protein
           contains Pfam domain, PF01179: Copper amine oxidase,
           enzyme domain
          Length = 300

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 373 VIFFLAISYDSSFNWI*SLKLKAQNTVRGGKPRVTNLENITSLV 504
           V F+L +  D   N    + LK Q T  G  PR + ++ + ++V
Sbjct: 91  VTFYLDLDVDGPDNSFVKVNLKRQETAPGESPRKSYMKAVRNIV 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,173,926
Number of Sequences: 28952
Number of extensions: 152834
Number of successful extensions: 267
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)