Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32083
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.1  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   6.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 195 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 305
           ETG   E  D++    V+V  +   +    DGKP  I
Sbjct: 85  ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +3

Query: 150 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 305
           A   N    + ++      +++++D   +PHV+VA  G  +        ETI
Sbjct: 97  ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 248  NNVRLVV---VVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVL 99
            +N+ LVV   +  S  Q+TS     ++ SLE  ++  +GA    R +D +V L
Sbjct: 956  SNIALVVDELINLSSKQITSHPQSLSIASLEASLIFVLGASSIIREDDSKVTL 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,522
Number of Sequences: 5004
Number of extensions: 31874
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)