Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32083
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical p...    28   4.6  
U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog prote...    27   8.0  
AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog (hedg...    27   8.0  

>Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical
           protein F49E12.9a protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 405 KSIQGIXKFSSWRRRPEE*IHPE 337
           KSI+G   + SW  +P + IHPE
Sbjct: 242 KSIEGKRNYMSWSMKPIKQIHPE 264


>U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical
           protein C49C8.5 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 91  PLQRTTLRSFGLNSTPAPMELTTTISRLPT 180
           P + TT    G   TP P E  TT ++LP+
Sbjct: 163 PSETTTTEITGTTPTPGPTEPPTTTAKLPS 192


>AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog protein
           WRT-5 protein.
          Length = 176

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 213 PSAHQFRYARCRWKSRNCSCKLHRGW 136
           PS H+ +YA C  ++ + +C  +  W
Sbjct: 48  PSCHEKKYAECPERATSTTCSTNSSW 73


>AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 5, isoform a protein.
          Length = 176

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 213 PSAHQFRYARCRWKSRNCSCKLHRGW 136
           PS H+ +YA C  ++ + +C  +  W
Sbjct: 48  PSCHEKKYAECPERATSTTCSTNSSW 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,407,680
Number of Sequences: 27780
Number of extensions: 189314
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)