Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32081
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   0.75 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   0.75 
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   4.0  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    24   5.3  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    24   5.3  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    24   5.3  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    24   7.0  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    23   9.2  

>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 197 RSKIPIPYQACRKELRSKNTIPAYL 123
           +  +P P Q CRK +  K   P YL
Sbjct: 181 KKTVPCPVQHCRKRITKKFIFPLYL 205


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 279 ACARLIXRFFSTDFFLRFYYHIFFSSVAQQNPYPLPSLP*GTSFQKYNTCL 127
           A  +L+  F   +FFL FY+    +S +  NPY   + P    F+    CL
Sbjct: 602 AIEKLVNFFSMANFFLAFYFVCNATSYSSLNPYGNWARPLFLVFEYILICL 652


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 98  NETNVVQYTNKQVLYFWNEVPYGRLGR 178
           NE  + +Y NK    FW +   G L R
Sbjct: 457 NENKLFRYVNKYTSQFWGQSFVGELQR 483


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 209 SVRSRSKIPIPYQACRKELRSKNTIP 132
           +VR  ++  +P+ A R+E  ++ TIP
Sbjct: 54  TVREEARKLVPFVAARREPETRETIP 79


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 155 LRSKNTIPAYLYTELHLFH*ISRKVIDRSQYFV 57
           L +K T PA       LFH   R ++DRS ++V
Sbjct: 13  LANKKTFPA-------LFHLFKRNLVDRSSFYV 38


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 209 SVRSRSKIPIPYQACRKELRSKNTIP 132
           +VR  ++  +P+ A R+E  ++ TIP
Sbjct: 54  TVREEARKLVPFVAARREPETRETIP 79


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 223 LSHFFQFGRAAKSLSPTKPAVRNFVPKIQYLLICILNYICF 101
           LSHFFQ   A   LS   P   +    I+ + + +++ I F
Sbjct: 233 LSHFFQNILAFTLLSIISPVAYSIASLIKRIFVIVVSIIWF 273


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 196 RDRTEKNVIVKP*EKIRGKKPXN 264
           R +  K  IVKP  + RG+KP N
Sbjct: 82  RRKVRKPEIVKPTLRKRGRKPKN 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,465
Number of Sequences: 5004
Number of extensions: 24169
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)