Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32081
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)                  30   0.41 
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_37096| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)                 26   8.8  
SB_16711| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   26   8.8  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          26   8.8  

>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
          Length = 510

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 242 IFSYGFTITFFSVRSRSKIPIPYQACRKELRSKN 141
           I S G T+ F+S+ SR KI +    C  E+R  N
Sbjct: 91  IISVGQTLEFYSMSSRHKILVTRSDCSLEIRENN 124


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 201 VAQQNPYPLPSLP*-GTSFQKYNTCLFVY 118
           + Q+  Y L   P   ++F+ YNTCLF Y
Sbjct: 348 IGQEKLYSLMGKPLLNSAFKGYNTCLFAY 376


>SB_37096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 214 FFQFGRAAKSLSPTKPAVRNFVPKIQYLLICILNYICF-IKFR 89
           F    R    + PT+PA R   P++   L CI  +  F + FR
Sbjct: 129 FLALNRFFAVVYPTRPAPRLLAPRVVIPLTCITAFATFGVYFR 171


>SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
          Length = 341

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/51 (21%), Positives = 21/51 (41%)
 Frame = -1

Query: 269 VSFXGFFPRIFSYGFTITFFSVRSRSKIPIPYQACRKELRSKNTIPAYLYT 117
           + +   F  +  Y F +  F      K+   Y +C +   ++  +P YL T
Sbjct: 238 ILYINSFINVLVYSFRMEDFKRELHRKVRACYSSCMRGETTQEVVPKYLQT 288


>SB_16711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 139 VFLE--RSSLRQAW*GIGILLRDRTEKNVIVKP*EKIRG 249
           VFLE  RS LR A   +GI + +R  +    +P   +RG
Sbjct: 357 VFLEDFRSVLRSAISRVGIYIAERENRQPFTRPRRTVRG 395


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 104 TNVVQYTNKQVLYFWNEVPYGRLGRG 181
           T+    T++  LY W    YGRLG G
Sbjct: 605 THSAAVTSEGELYTWGRGNYGRLGHG 630


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 249  STDFFLRFYYHIFFSSVAQQNPY 181
            +TD  LRF+YH++  +V + N Y
Sbjct: 3734 NTDCKLRFWYHMYGDTVEKLNVY 3756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,268,433
Number of Sequences: 59808
Number of extensions: 159808
Number of successful extensions: 355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)