Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32079
         (513 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4KA59 Cluster: NinG protein; n=12; Gammaproteobacteria...    36   0.54 

>UniRef50_Q4KA59 Cluster: NinG protein; n=12;
           Gammaproteobacteria|Rep: NinG protein - Pseudomonas
           fluorescens (strain Pf-5 / ATCC BAA-477)
          Length = 196

 Score = 35.9 bits (79), Expect = 0.54
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 176 CGTXHEGXYHNLHQSI*IVAPQIXNSAFSILFSCSPRKAHLQDSLRQY-FSLLACLRAE 3
           CG  H+G YH  H       P+I     ++   C+P   HL  +L  Y  SLL  + AE
Sbjct: 100 CGRHHDGQYHAGHYRTVGANPEIRFEPLNVWKQCAPCNTHLSGNLVNYRLSLLERIGAE 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,533,966
Number of Sequences: 1657284
Number of extensions: 7595787
Number of successful extensions: 12019
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12018
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)