Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32079
         (513 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132674-1|AAI32675.1| 1454|Homo sapiens mediator complex subuni...    30   4.1  
BC132672-1|AAI32673.1| 1454|Homo sapiens mediator complex subuni...    30   4.1  
BC098377-1|AAH98377.1| 1454|Homo sapiens mediator complex subuni...    30   4.1  
AF304448-1|AAG22547.1| 1454|Homo sapiens vitamin D receptor-inte...    30   4.1  
AF135802-1|AAD24360.1| 1454|Homo sapiens thyroid hormone recepto...    30   4.1  
AF104256-1|AAD12725.1| 1454|Homo sapiens transcriptional co-acti...    30   4.1  
AB006651-1|BAA28626.1| 1454|Homo sapiens EXLM1 protein.                30   4.1  
AB067206-1|BAC02244.1|  126|Homo sapiens immunoglobulin heavy ch...    29   7.2  

>BC132674-1|AAI32675.1| 1454|Homo sapiens mediator complex subunit 14
            protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 355  FIALVRAHRHLPRKMRQATLQXINS*DPXV 266
            F+  V   RHL R ++Q TLQ INS +P V
Sbjct: 1210 FLGSVIMRRHLQRIIQQETLQLINSNEPGV 1239


>BC132672-1|AAI32673.1| 1454|Homo sapiens mediator complex subunit 14
            protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 355  FIALVRAHRHLPRKMRQATLQXINS*DPXV 266
            F+  V   RHL R ++Q TLQ INS +P V
Sbjct: 1210 FLGSVIMRRHLQRIIQQETLQLINSNEPGV 1239


>BC098377-1|AAH98377.1| 1454|Homo sapiens mediator complex subunit 14
            protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 355  FIALVRAHRHLPRKMRQATLQXINS*DPXV 266
            F+  V   RHL R ++Q TLQ INS +P V
Sbjct: 1210 FLGSVIMRRHLQRIIQQETLQLINSNEPGV 1239


>AF304448-1|AAG22547.1| 1454|Homo sapiens vitamin D
            receptor-interacting protein complex component DRIP150
            protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 355  FIALVRAHRHLPRKMRQATLQXINS*DPXV 266
            F+  V   RHL R ++Q TLQ INS +P V
Sbjct: 1210 FLGSVIMRRHLQRIIQQETLQLINSNEPGV 1239


>AF135802-1|AAD24360.1| 1454|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP170
            protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 355  FIALVRAHRHLPRKMRQATLQXINS*DPXV 266
            F+  V   RHL R ++Q TLQ INS +P V
Sbjct: 1210 FLGSVIMRRHLQRIIQQETLQLINSNEPGV 1239


>AF104256-1|AAD12725.1| 1454|Homo sapiens transcriptional co-activator
            CRSP150 protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 355  FIALVRAHRHLPRKMRQATLQXINS*DPXV 266
            F+  V   RHL R ++Q TLQ INS +P V
Sbjct: 1210 FLGSVIMRRHLQRIIQQETLQLINSNEPGV 1239


>AB006651-1|BAA28626.1| 1454|Homo sapiens EXLM1 protein.
          Length = 1454

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 355  FIALVRAHRHLPRKMRQATLQXINS*DPXV 266
            F+  V   RHL R ++Q TLQ INS +P V
Sbjct: 1210 FLGSVIMRRHLQRIIQQETLQLINSNEPGV 1239


>AB067206-1|BAC02244.1|  126|Homo sapiens immunoglobulin heavy chain
           VHDJ region protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 280 RNLYXARWPGAFYVVDVYG 336
           R LY + WPG +Y +DV+G
Sbjct: 99  RGLYASGWPGEYYGMDVWG 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,364,039
Number of Sequences: 237096
Number of extensions: 1205818
Number of successful extensions: 1669
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)