Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32076
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 29 2.6
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 29 2.6
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 29 2.6
AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical ... 28 3.4
Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z82286-8|CAB05308.2| 487|Caenorhabditis elegans Hypothetical pr... 27 8.0
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 27 8.0
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 27 8.0
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 27 8.0
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 27 8.0
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 446 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 324
P +KH S++VWG + RR+ S FQ+E +L T
Sbjct: 158 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 199
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 446 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 324
P +KH S++VWG + RR+ S FQ+E +L T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 228
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 446 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 324
P +KH S++VWG + RR+ S FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 446 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 324
P +KH S++VWG + RR+ S FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158
>AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical
protein ZK973.2 protein.
Length = 865
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 359 KKNPRDGQRNKTNLSTPTPQY*SSNVSSQ 445
+K PR G++ + ST PQ S ++SSQ
Sbjct: 214 QKKPRGGKKKEAEASTSVPQASSPDISSQ 242
>Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical
protein H36L18.1 protein.
Length = 446
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 103 NPSLYYKSRGRPAYFVFKKKTTYLTEFELNLFSYRKKY 216
N +LYY G+P +F ++ +Y E L SY +Y
Sbjct: 279 NAALYYHEDGKPYFFKSMQRESYRIELFTILESYFWQY 316
>Z82286-8|CAB05308.2| 487|Caenorhabditis elegans Hypothetical
protein W02A2.5 protein.
Length = 487
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 272 YEVGFIVKCTIT*PYLDQLTAKLQIEMI 355
+++GFI KC +T P T L IE +
Sbjct: 376 FKLGFIPKCEVTEPTASDATKPLDIESV 403
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 446 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 324
P +KH S++VWG + RR+ S FQ+E + T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 158
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 446 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 324
P +KH S++VWG + RR+ S FQ+E + T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 228
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 446 PEMKH*NFSIVVWG-WRDWFYFVARRVDSFFISFQFEALLST 324
P +KH S++VWG + RR+ S FQ+E + T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 228
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 187 LNLFSYRKKYICIYI 231
LNLFS++++YIC+ I
Sbjct: 224 LNLFSFKQRYICLVI 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,532,486
Number of Sequences: 27780
Number of extensions: 195380
Number of successful extensions: 405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -