Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32076
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   10.0 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   10.0 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   10.0 

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 457 YHHCLR*NIRTSVLWCGGGEIGFISLPV 374
           Y+ C+   +R +V+   GG   F  LP+
Sbjct: 40  YNQCIAEAVRDAVVSLAGGLKSFKILPI 67


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 406 GGEIGFISLPVAWILFLYH 350
           GG    +SL VA +L L+H
Sbjct: 75  GGSYSSVSLQVANLLRLFH 93


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 442 SGNDDKTNNSNCHGYHTGF 498
           S  D   ++ + +G HTGF
Sbjct: 70  SSGDSPVSSHSSNGIHTGF 88


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 406 GGEIGFISLPVAWILFLYH 350
           GG    +SL VA +L L+H
Sbjct: 165 GGSYSSVSLQVANLLRLFH 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,643
Number of Sequences: 438
Number of extensions: 2410
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)