Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32076
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    29   2.5  
At4g14840.1 68417.m02281 expressed protein                             27   5.7  
At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family pr...    27   7.5  
At1g34180.1 68414.m04239 no apical meristem (NAM) family protein...    27   7.5  
At4g22170.1 68417.m03205 F-box family protein contains F-box dom...    27   9.9  
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    27   9.9  

>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 436  NIRTSVLWCGGGEIGFISLPVAWILFLYHFNLKLCCQLIEVGSCNCTFYYKTDLIV 269
            N+RTS+  C G  +  +   +A +L L  + L+L    + +G  +C F     L++
Sbjct: 1701 NLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWV-LGDVHCLFRMVQPLVI 1755


>At4g14840.1 68417.m02281 expressed protein
          Length = 555

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 359 KKNPRDGQRNKTNLSTPTPQY*SSNVSSQAMMIKRTIQTVMDIT 490
           K  PR   R KT  +TP  ++ S+  SS     ++    V D+T
Sbjct: 216 KATPRASNRKKTATTTPAAEHKSARESSSKRYTRQQQGDVFDLT 259


>At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 353

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 397 IGFISLPVAWILFLYHFNLK-LCCQLIEVGSCNCTFYYKTD 278
           IGF+       LF+    +K LCC ++  G   C  Y+K D
Sbjct: 191 IGFLKASSDEALFMDVEQMKHLCCVVVTNGEKGCRIYHKDD 231


>At1g34180.1 68414.m04239 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM-like protein GI:8809651 from (Arabidopsis
           thaliana)
          Length = 564

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 394 GFISLPVAWILFLYHFNLKLCCQLIEVGSCNCTFYYKTD 278
           GF   P    L +Y+   K+CC+ + V +      YK D
Sbjct: 19  GFRFHPTDEELVVYYLKRKICCKKLRVNAIGVVDVYKVD 57


>At4g22170.1 68417.m03205 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 363

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 419 IVVWGWRDWFYFVARRVDS 363
           +V+WG RDW  F +++ D+
Sbjct: 169 VVLWGLRDWCVFYSKKGDT 187


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -3

Query: 433 IRTSVLWCGGGEIGFI-----SLPVAWILFLYH-FNLKLCCQLIEVGSCNCTFYYKTDLI 272
           +R ++L CGGG+ GF+      LP      +     +K C Q   +  CNCT +  TD+ 
Sbjct: 340 VRKTLLSCGGGD-GFVRLKKMKLPDTTTASVDRGIGVKECEQKC-LRDCNCTAFANTDIR 397

Query: 271 VKGS 260
             GS
Sbjct: 398 GSGS 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,660,253
Number of Sequences: 28952
Number of extensions: 172437
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)