Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32074
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    28   3.4  
AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine re...    27   8.0  

>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 235 TRVVYYINTIIIPKHDHAVRAFLRPMRCDVLVFELTKKRAPWLILPVVICLSQRLSHACL 414
           T + Y IN    P     +R++L    CD    E  +K   WL+ P     S  ++ A  
Sbjct: 593 TSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDA---SSFMTTATA 649

Query: 415 SASRIKAIPRMAQYI 459
           +  +I  + R+ Q I
Sbjct: 650 TLKKIPDLDRLLQKI 664


>AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine
           receptor, class z protein82 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 53  FVKTNYNISYGVFI*TLYVLT*TVYAKSRWTDF 151
           +++  Y I +G  +  +Y  + T+++KSRWT F
Sbjct: 149 YIRLFYLICFGTEL-IMYFYSPTIWSKSRWTTF 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,663,995
Number of Sequences: 27780
Number of extensions: 165360
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)