Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32074
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    29   2.5  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    28   4.3  
At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing ...    27   9.9  

>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 271 PK-HDHAVRAFLR--PMRCDVLVFELTKKRAPWLILPVVICLSQRLSHACLSASRIKAIP 441
           PK H+H +  F R  P+ C V    LT  R P+ I P    ++ +   +C S  R+  I 
Sbjct: 274 PKWHEHTLSLFPRKTPLTCSVCA--LTHTRCPFYICPPCDFVAHQ---SCFSLPRVIRIS 328

Query: 442 RMAQYISF 465
           R    ISF
Sbjct: 329 RHHHRISF 336


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 361 LILPVVICLSQRLSHACLSASRIKAIPRMAQY 456
           ++  ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 14  MVSQIISCLSQSSSLLCLSDSRRLILPKTCTY 45


>At4g29000.1 68417.m04145 tesmin/TSO1-like CXC domain-containing
           protein similar to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427,
           SP|Q9Y4I5 Tesmin (Metallothionein-like 5,
           testis-specific) {Homo sapiens}; contains Pfam profile
           PF03638: Tesmin/TSO1-like CXC domain
          Length = 603

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 303 TPDAVRRFSFRANEKESSLVDPASSYMLVSKIKPCMSQCKP 425
           T    R+  F     E SL  PA+  ++ + +KP +S   P
Sbjct: 23  TKKPARQLDFTGGSDEHSLSKPAAPTVVATSVKPIISSSVP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,250
Number of Sequences: 28952
Number of extensions: 147713
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)