Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32071
(305 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 43 6e-05
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 40 4e-04
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.015
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.14
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.24
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 30 0.32
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 29 0.57
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.75
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 28 1.3
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 28 1.3
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 28 1.7
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 27 2.3
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 27 2.3
SB_32181| Best HMM Match : CUB (HMM E-Value=0) 27 3.0
SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4) 27 4.0
SB_22284| Best HMM Match : PDT (HMM E-Value=0.18) 27 4.0
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 27 4.0
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 26 5.3
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.3
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 26 5.3
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 26 5.3
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 26 7.0
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 26 7.0
SB_18622| Best HMM Match : DUF229 (HMM E-Value=0.29) 26 7.0
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 42.7 bits (96), Expect = 6e-05
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +3
Query: 108 ISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQVAGEYS 221
+ L+ E+IAGA AG QV T P+E++KI++Q+AG ++
Sbjct: 106 LPLHLEMIAGAAAGCCQVAVTTPMEMLKIQMQMAGRHA 143
Score = 29.5 bits (63), Expect = 0.57
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 93 PIKGNISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQVAGEYSR 224
P++ S A+++ GA AG V T PL++ K RLQ G R
Sbjct: 55 PMEKPNSFSAKLLNGAIAGMVGVTCTFPLDLCKTRLQNQGSGQR 98
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 132 AGACAGGSQVVFTNPLEIVKIRLQV 206
AG AG + V NPL+++K RLQ+
Sbjct: 211 AGCLAGMTASVAVNPLDVIKTRLQL 235
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 123 EIIAGACAGGSQVVFTNPLEIVKIRLQVAGEY-SRGDQS 236
E + GA A FTNPLE+VK R+Q+ GE SRG S
Sbjct: 7 EFVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYS 45
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 120 AEIIAGACAGGSQVVFTNPLEIVKIRLQVAGE 215
A+ I+GA AGG Q + P+E+ K R+QV G+
Sbjct: 246 AQAISGAIAGGVQSIVCCPMELAKTRVQVQGQ 277
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 111 SLYAEIIAGACAGGSQVVFTNPLEIVKIRLQ 203
S+ +++AG G + V+ T PL++++ RLQ
Sbjct: 725 SMIVDLVAGGLGGSTGVILTCPLDVIQTRLQ 755
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 129 IAGACAGGSQVVFTNPLEIVKIRLQVAGEYSRG 227
+AGACA NP+E++K RLQ+ G RG
Sbjct: 2 LAGACATVFHDGAMNPIEVIKQRLQMYGSPYRG 34
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 126 IIAGACAGGSQVVFTNPLEIVKIRLQVAGEYSRG 227
++ GA AG + PL++V+ R+Q+AG + G
Sbjct: 110 LLCGALAGATSQTLAYPLDVVRRRMQLAGTVADG 143
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 126 IIAGACAGGSQVVFTNPLEIVKIRL--QVAGEYS 221
I+AG AG + T PL+IV+ RL QVA E++
Sbjct: 2 IVAGGLAGLTACSCTYPLDIVRSRLAFQVADEHT 35
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 29.5 bits (63), Expect = 0.57
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 168 TNPLEIVKIRLQVAGEYSRGDQSEGLVRRQ 257
TNP+E+VKIR+Q+ E S+ + R +
Sbjct: 24 TNPIEVVKIRMQLDNELGSKHNSKDIFRER 53
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 111 SLYAEIIAGACAGGSQVVFTNPLEIVKIRLQ 203
+L+ +I+AG +G P ++VKIR Q
Sbjct: 113 ALWKKIVAGVSSGVIGSAIATPTDLVKIRFQ 143
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 126 IIAGACAGGSQVVFTNPLEIVKIRLQV 206
I+AG AGG ++ T P E VK +LQ+
Sbjct: 44 ILAGGIAGGLEICCTFPTEYVKTQLQL 70
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 108 ISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQVAGEYSRG 227
+S+ + G AG PL++V+ R+Q+AG G
Sbjct: 170 LSIIGGFVCGGVAGAVSQTIAYPLDVVRRRMQLAGAVPDG 209
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 102 GNISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQV 206
G+++ I G AG V T P ++VK RLQ+
Sbjct: 519 GDLTSGQNFICGIMAGAMASVVTQPADVVKTRLQM 553
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 105 NISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQV-AGEYSRG 227
N + +I A G V P E+VKIR Q AG Y+ G
Sbjct: 121 NPKILKKIAASITTGIMAVSVAQPTEVVKIRFQADAGRYTSG 162
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 132 AGACAGGSQVVFTNPLEIVKIRLQ 203
+G AG + TNPL++++ RLQ
Sbjct: 210 SGVLAGVTAATLTNPLDVIRTRLQ 233
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 108 ISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQVAGEYSRGDQSEGLVRRQGPXAL 272
+S +IAG+ G + V PL+ +K+RLQ + D V+ +G L
Sbjct: 67 LSPLRNLIAGSVGGVTGVTAGQPLDTIKVRLQASFGAGPLDMLARTVKTEGVRGL 121
>SB_32181| Best HMM Match : CUB (HMM E-Value=0)
Length = 588
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 17 RSSSVSPRXKAIKLTVNDLVRDKFMANK 100
R+ S+ +A+K+T+ DL DK++ N+
Sbjct: 401 RTPSLEEIEQAVKITLKDLTEDKWITNR 428
>SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)
Length = 400
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 222 RGDQSEGLVRRQGPXALRTVQGGEG 296
R D E L R GP + T+ GGEG
Sbjct: 304 RDDVFEILAPRSGPTSSHTIDGGEG 328
>SB_22284| Best HMM Match : PDT (HMM E-Value=0.18)
Length = 773
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 222 RGDQSEGLVRRQGPXALRTVQGGEG 296
R D E L R GP + T+ GGEG
Sbjct: 458 RDDVFEILAPRSGPTSSHTIDGGEG 482
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 111 SLYAEIIAGACAGGSQVVFTNPLEIVKIRLQ 203
++ ++AG G + T PLE+++ RLQ
Sbjct: 704 AMIVHLVAGGLGGSMGALATIPLEVIQTRLQ 734
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 85 IHGQ*KETYHCTLRSSPAHVRAVLKWC 165
IH + YH P H R V+ WC
Sbjct: 2096 IHSKVYSAYHVIKARVPTHGRPVVNWC 2122
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 117 YAEIIAGACAGGSQVVFTNPLEIVKIRLQV 206
+ ++AG AG +PLE VKI LQ+
Sbjct: 35 FKHLLAGGIAGAVSRTSVSPLERVKILLQI 64
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 123 EIIAGACAGGSQVVFTNPLEIVKIRLQVAG 212
+++ G+ AG T PL++V+ R+Q+ G
Sbjct: 164 KLMCGSLAGAVSQTATYPLDVVRRRMQMKG 193
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 126 IIAGACAGGSQVVFTNPLEIVKIRLQVAGEYSRGD 230
+IAG+ +G PL+++K+RLQ + G+
Sbjct: 24 LIAGSVSGMLGCAAGQPLDLLKVRLQAMNQVKPGE 58
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 111 SLYAEIIAGACAGGSQVVFTNPLEIVKIRLQ 203
S+ IAG+ AG + + PL+ +K+RLQ
Sbjct: 37 SVLKNSIAGSAAGAAANLVGFPLDTIKVRLQ 67
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 157 KWCSRIPWKLSKFVFKSPAS 216
K C PWK F+ KSP+S
Sbjct: 103 KECELPPWKSPSFITKSPSS 122
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 29 VSPRXKAIKLTVNDLVRDKF 88
VSP KAIKLT ND VR F
Sbjct: 984 VSPE-KAIKLTTNDFVRGIF 1002
>SB_18622| Best HMM Match : DUF229 (HMM E-Value=0.29)
Length = 307
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 305 RRQAFAPLYSPKSPRSLTTDQAFTLVPP 222
++ +A LY+ SP +T FTL+ P
Sbjct: 102 KKHGYATLYTEDSPGIVTGQSLFTLIDP 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,851
Number of Sequences: 59808
Number of extensions: 188288
Number of successful extensions: 717
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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