Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32071
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   2.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   2.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   2.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.5  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    20   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   6.0  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 303 EAGLRPLVQSEEPXVLDDGPGLH 235
           +AG+RP   S +P  +  G  LH
Sbjct: 18  DAGVRPAENSSQPLAVVFGLSLH 40


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 108 ISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQV 206
           ++   + +AG  A         P+E VK+ LQV
Sbjct: 8   VAFAKDFLAGGVAAAISKTTVAPIERVKLLLQV 40


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 108 ISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQV 206
           ++   + +AG  A         P+E VK+ LQV
Sbjct: 8   VAFAKDFLAGGVAAAISKTTVAPIERVKLLLQV 40


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 112 HCTLRSSPAHVRAVLKWCSRIP 177
           HC L   P        W S+ P
Sbjct: 388 HCELHMQPRKKNCCRSWLSKFP 409


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 112 HCTLRSSPAHVRAVLKWCSRIP 177
           HC L   P        W S+ P
Sbjct: 388 HCELHMQPRKKNCCRSWLSKFP 409


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 62  VNDLVRDKFMANKRKH 109
           + D+VR+K +  KRK+
Sbjct: 455 IMDMVREKIIEEKRKN 470


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 137 RMCGRFSSGVHESPGNCQ 190
           R+CG  +SG H    +C+
Sbjct: 10  RVCGDKASGFHYGVHSCE 27


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 137 RMCGRFSSGVHESPGNCQ 190
           R+CG  +SG H    +C+
Sbjct: 68  RVCGDKASGFHYGVHSCE 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,755
Number of Sequences: 438
Number of extensions: 1483
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)