Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32070
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.6  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   6.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.4  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 302  GSVVFSKAITLCGLVSIKSPVLCKKYSMKVEIILGKVVAF 183
            G ++F++ I +C L+  K  V      M  +I L +VV +
Sbjct: 1164 GCIIFTEGIWICSLIHRKKIVKFLDGIMAFDIQLKQVVNY 1203


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 323 MSEAGEFGSVVFSKAITLCGLVSIKSPVLCKK--YSMKVEIILG 198
           +SE     ++V    +      ++ +PVLCK+  Y   +  +LG
Sbjct: 58  ISETKSIVAMVMGTIVNAFSCYTVLAPVLCKRQQYCQLMSKLLG 101


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 440 YLFSFISRNLSWTSSLKPC 384
           Y   F  +   WTSS  PC
Sbjct: 675 YENKFYRQEAQWTSSDNPC 693


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,376
Number of Sequences: 336
Number of extensions: 2817
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)