Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32070
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 29 0.30
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 2.8
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 3.7
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 25 4.9
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 6.5
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 25 6.5
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.6
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 25 8.6
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 8.6
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 8.6
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 8.6
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.5 bits (63), Expect = 0.30
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +1
Query: 202 NIISTFIEYFLHNTG-DLIDTSPHRVIAF-ENTTDPNSPASDMQYHYLIFPPSSYNLLDM 375
++I+ ++ +L N +L+DTS H++ N + ++ ++ PP ++ LLD
Sbjct: 1139 HVIAGLLKLYLRNLPTNLLDTSMHKLFELLPNVPNDSAALGELCDVISKLPPENFALLDS 1198
Query: 376 FRKHGLSEEVHDKFREMNENKYTMLVYNTLLKPKSAGRLLL 498
H +K +MN ++ TL P +L+
Sbjct: 1199 LLHHLRRIIAFEKVNKMNIRNVCIVFSPTLNIPSDIFMMLI 1239
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 2.8
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 223 EYFLHNTGDLIDTSPHRVIAFENTTDPNSPASDM--QYHYLIFPPSSYNLLDMFRKHGLS 396
E L + ++++S + F N T PN P+S++ I PPS +F GL
Sbjct: 332 ESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPS-----QVFMSTGLL 386
Query: 397 EEVHDKFREMNENKYTMLVYNTLLKPKS 480
+ H + +N +T L +T KP +
Sbjct: 387 SKQHRPRKNIN---FTPLPPSTPSKPST 411
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 9 LSFPLVLLTPHSCCCSPGIGPRKHLEDLNIEVKADLPVGVKLAGPFVRTRLLYQTWR 179
++ P++ P S R +L+ L I V A +PVG+ A F L++Q ++
Sbjct: 103 ITSPIIRTLPFRSSSSSSSNYRHNLDFLEITVFAVVPVGI--ASFFTMVMLIWQLYK 157
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 283 FENTTDPNSPASDMQYHYLIFPP-SSYNLLDMFRKHGLSEEV-HDKFREMNENKYTMLVY 456
F +DP+ +D ++ L++PP L++ +RK + +D +E N++ +
Sbjct: 124 FARLSDPDLATNDTAFYQLLYPPIPKDELVEAYRKELIRTYFPNDYPKEANKDIPSSAEA 183
Query: 457 NTLLKPKSA 483
+T+L +S+
Sbjct: 184 DTMLNLESS 192
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 252 NRHQPTQSYRFRKHNRPELSCF*HAVPLLNIPSK 353
N P Q Y F KHN+ +S VP +P K
Sbjct: 442 NESFPEQMYPFIKHNKDYISNHPDEVPPDGLPQK 475
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 376 FRKHGLSEEVHDKFREMNENKYTMLVYN 459
F K+GL+EE+ FR+ E+ +T+ N
Sbjct: 22 FWKNGLAEELELLFRKQCEDTFTLQAIN 49
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 289 NTTDPNSPASDMQYHYLIFPPSSYNLLDMFRKHGLSEE 402
N N ASD YL P SYN L ++ LS E
Sbjct: 105 NVLQLNINASDNSLAYLSKPEESYNFLTIYFSTLLSYE 142
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 412 YRGLLRLNRAYGTCPISCRSLEG-ILSSGTACQKQESSGR 296
Y G+ ++ GT I C++ G IL G A +KQ ++G+
Sbjct: 87 YTGIKQVESEAGTLVI-CKNYTGDILHFGMALEKQRTAGK 125
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -2
Query: 373 CPISCRSLEGILSSGTACQKQESSGRLCFRKR*LCVGWCRLSRQYC 236
C CR ++ +G C + + R+ F LC+G C + + C
Sbjct: 21 CRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIG-CGICVKKC 65
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 340 IFPPSSYNLLDMFRKHGLSEE 402
+FPPS +L +F HG+ +E
Sbjct: 209 MFPPSLSRILSLFSFHGVRKE 229
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 346 PPSSYNLLDMFRKHGLSEEVHDKFREMNE 432
PPS+YNL ++ + E + +K ++ E
Sbjct: 120 PPSAYNLFQKNQRSEIKESLGEKSNDVKE 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,759
Number of Sequences: 5004
Number of extensions: 46155
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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