Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32070
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39324| Best HMM Match : S-antigen (HMM E-Value=1.2)                 30   0.95 
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)                      27   6.7  
SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         27   8.9  

>SB_39324| Best HMM Match : S-antigen (HMM E-Value=1.2)
          Length = 252

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 25/87 (28%), Positives = 43/87 (49%)
 Frame = +1

Query: 235 HNTGDLIDTSPHRVIAFENTTDPNSPASDMQYHYLIFPPSSYNLLDMFRKHGLSEEVHDK 414
           H++ D +  + +R I FE T +  +  SD        P     L+D   K     +V++K
Sbjct: 162 HHSPDAVTRAEYRKIKFEVTGEAETSESD-DGDDSAMP----GLIDD-AKSVSQVQVYEK 215

Query: 415 FREMNENKYTMLVYNTLLKPKSAGRLL 495
            +E+NE ++T ++ N LLK K +   L
Sbjct: 216 SKEVNEEEWTDILGNGLLKKKVSDNAL 242


>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 90  LNIEVKADLPVGVKLAGPFVRTR 158
           LN+  K+DLPVGV +  PF + +
Sbjct: 576 LNVPPKSDLPVGVPVFAPFAKDK 598


>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 457 CKRAWCICSRSFHGTYRGLLRLNRAYGTCPISCRSL-EGILSSGTACQKQESSGRLC 290
           C + W  C +    + +G     +  GTC   C +  +G  + G  C  ++   R+C
Sbjct: 250 CGKGWGTCGKGCRTSGKGCGTCGKGCGTCGKGCGTCGKGCGTCGAGCVMRDVMYRIC 306


>SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)
          Length = 525

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 172 PGDKKATTLPNIISTFIEYF-LHNTGDLIDTSPHRVIAFENTTD--PNSPASD 321
           P D K   + N  +  I Y  + NT  +ID+   R+IA   TT+  P SPA++
Sbjct: 167 PKDHKLRKIFNRNTIKISYSCMSNTKQIIDSHNKRIIASSITTEDAPTSPATN 219


>SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 295 TDPNSPASDMQYHYLIFPPSSYN 363
           T P++P    Q+H L  PPS+ N
Sbjct: 651 TSPSAPVPYFQWHRLTIPPSTMN 673


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 349 EGILSSGTACQKQESSGRLCFRKR*LCVGWCRLSRQYCAR 230
           EGI ++ +  + QE S RLCFR+    V W      +C +
Sbjct: 479 EGIATTMSKERAQEISCRLCFRRLYRLVRWLYRCGMHCPK 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,120
Number of Sequences: 59808
Number of extensions: 341118
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)