Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32070
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical...    29   1.5  
AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical...    29   1.5  
AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z47075-6|CAA87379.1|  538|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF500111-1|AAM27196.1|  538|Caenorhabditis elegans poly ADP-ribo...    28   4.5  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    27   7.8  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = +2

Query: 8   VVVSAGAINSPQLLLLSG 61
           V+++ GAIN+PQLL+LSG
Sbjct: 298 VILAGGAINTPQLLMLSG 315


>AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.16 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 51  CSPGIGPRKHLEDLNIEVKADL--PVGVKLAGPFVRTRLLYQTWR 179
           C   I P +++ D+ I++++D+  P+ V +AG  + ++  +Q W+
Sbjct: 218 CYNEIKPERYVRDMLIKLESDVTNPLKVSMAGDELTSKATFQKWK 262


>AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.15 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 51  CSPGIGPRKHLEDLNIEVKADL--PVGVKLAGPFVRTRLLYQTWR 179
           C   I P +++ D+ I++++D+  P+ V +AG  + ++  +Q W+
Sbjct: 218 CYNEIKPERYVRDMLIKLESDVTNPLKVSMAGDELTSKATFQKWK 262


>AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical
           protein F45D11.14 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 51  CSPGIGPRKHLEDLNIEVKADL--PVGVKLAGPFVRTRLLYQTWR 179
           C   I P +++ D+ I++++D+  P+ V +AG  + ++  +Q W+
Sbjct: 225 CYNEIKPERYVRDMLIKLESDVTNPLKVSMAGDELTSKATFQKWK 269


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 418 GTYRGLLRLNRAYGTCPISCRSLEGILSSGTACQKQESSGRLC 290
           G+  G +  + +  TCP     ++  L+S   C +  SS R+C
Sbjct: 141 GSNGGTVSCSPSVSTCPSGSSCMQSTLNSAFICCRSSSSQRIC 183


>Z47075-6|CAA87379.1|  538|Caenorhabditis elegans Hypothetical
           protein E02H1.4 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 442 CICSRSFHGTYRGLLRLNRAYGTCPISCRSLEGILSSGTACQKQESS 302
           CIC    H      L+ N A+G  PI C SL  + +      K E S
Sbjct: 161 CICDEDVHLGLLKQLKFNEAFGR-PIDCLSLAQLTTGYEILSKIEES 206


>AF500111-1|AAM27196.1|  538|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-2 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 442 CICSRSFHGTYRGLLRLNRAYGTCPISCRSLEGILSSGTACQKQESS 302
           CIC    H      L+ N A+G  PI C SL  + +      K E S
Sbjct: 161 CICDEDVHLGLLKQLKFNEAFGR-PIDCLSLAQLTTGYEILSKIEES 206


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 316 SDMQYHYLIFPPSSYNLLDMFRKHGLS 396
           +D+ + +   PP+S+ L  +F +HGL+
Sbjct: 205 ADLSWRFYTHPPTSFCLARVFLRHGLT 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,202,310
Number of Sequences: 27780
Number of extensions: 258729
Number of successful extensions: 657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)