Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32070
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    32   0.003
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 12/20 (60%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   KXVVVSAGAINSPQLLLLSG 61
           + V++SAG++N+PQLL+LSG
Sbjct: 315 REVILSAGSVNTPQLLMLSG 334



 Score = 30.3 bits (65), Expect = 0.012
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 60  GIGPRKHLEDLNIEVKADLP-VGVKL 134
           GIGP++HL  L I V  DLP VG  L
Sbjct: 334 GIGPKEHLRSLGIPVVVDLPGVGENL 359


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 421 HGTYRGLLRLNRAYGTCPISCRSLEGILSSG 329
           H +   LL    A G CP   R+  G  SSG
Sbjct: 520 HASSAPLLAATLAGGLCPHRRRANSGSTSSG 550


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -1

Query: 332 WYCMSEAGEFGSVVFSKAITLCGLVSIKSPVLCKKYSMKVEIILGKVVAFLSPGLV 165
           W          S++   AI+L   + IK P+   ++  +   + G  V +L  GL+
Sbjct: 101 WIAFDVMCSTASILNLCAISLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLI 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,158
Number of Sequences: 438
Number of extensions: 3201
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)