Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32068
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.7  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    26   3.8  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    25   5.1  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   5.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.7  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   6.7  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   8.9  

>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 215 PLRTPSNSSTRGEFSSRGTPSNPTXGASLPPFS 117
           PLRTP++SS         TPS P+    L  F+
Sbjct: 237 PLRTPTSSSKTFVIVDHSTPSPPSIRTKLEAFA 269


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 209 RTPSNSSTRGEFSSRGTPSN 150
           R PSN+STR  F +  T +N
Sbjct: 71  RVPSNNSTRASFGAASTDTN 90


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 331 AIKAYGVPDIDVFQTVDLWEKKDIXPSXEDTVCPRS 438
           A+  YG+PDI +F ++D    K   P+   T  P S
Sbjct: 304 AMILYGIPDIRLFWSLDERFSKQFLPNKISTFKPFS 339


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = -1

Query: 363 IDVGYTVCFDCXTXSL*CSPSF*TVPPVVLILGTEPGFSLLMSWQRTVPSLEDTLK*FHQ 184
           ID G+++C +    ++  S +F ++   VL     P F +L     T+ SL D +     
Sbjct: 265 IDTGFSMCKEITNVAIIISINFISLEKQVLSFKDNPSFFMLSG--NTIISLHDMITQLSN 322

Query: 183 GGI*LPRDALQSHXWGFPSSLL 118
             I     A  S  WG    LL
Sbjct: 323 DSI----GAAVSLTWGIALHLL 340


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 101 SDLSANLTFPENM 63
           S+L+ NLTFPEN+
Sbjct: 727 SELNVNLTFPENL 739


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 241 DELAKNSAVP*GHPQI 194
           DEL KN +V  GHP+I
Sbjct: 284 DELVKNPSVTKGHPEI 299


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 155 SNPTXGASLPPFSRVALGSDLSANLTFPEN 66
           S PT  + L P S  +L S   AN + PE+
Sbjct: 621 STPTPASVLAPPSSASLSSSKDANRSVPES 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,570
Number of Sequences: 5004
Number of extensions: 38268
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)