Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32068
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     31   0.43 
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)                    31   0.56 
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)                     31   0.74 
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                30   0.98 
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)                      30   0.98 
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            30   1.3  
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   28   4.0  
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)                   28   5.3  
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)         27   6.9  

>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 59  TTCSLGTSSSR*DRFQAQPWRREEGKPQXWDWRASLGS*IPPWWNY 196
           T  SLG+  S  D   +    R EGK   W  R SLGS +  +++Y
Sbjct: 449 TKWSLGSDGSEYDESNSSVRTRPEGKQPVWQNRESLGSEVSGYYSY 494


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 254  PGSVPKINTTGGTVQNDGEHHKLXVXQSKHTVYPT 358
            P  V +I  TGG + NDGE H + + + + TV  T
Sbjct: 1771 PYDVLRIGVTGGAMLNDGEWHMIEIHRDETTVRVT 1805


>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 334 IKAYGVPDIDVFQTVDLWEKKDIXPS 411
           IK+YGV +  +F TVDL+EK+++  S
Sbjct: 221 IKSYGVQEEYIFVTVDLYEKRNVWGS 246


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +1

Query: 346 GVPDIDVFQTVDLWEKKDI 402
           GVP  D+FQTVDL+EK+++
Sbjct: 141 GVPKTDMFQTVDLYEKQNM 159


>SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)
          Length = 307

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 224 QCRPLRTPSNSSTRGEFSSRGTPSNPTXGAS 132
           Q +  + PS +ST+G   + G PS PT GAS
Sbjct: 148 QTKTTQGPSGASTQGATPTTGGPSGPTGGAS 178


>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
          Length = 172

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 212 RDGTVLCQLINKLXPGSVPKIN 277
           + G VLC+L N + PG++ KIN
Sbjct: 95  KSGVVLCKLANAIQPGAIKKIN 116


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 212 RDGTVLCQLINKLXPGSVP 268
           RDG  +C+L+N L PG +P
Sbjct: 454 RDGMAICELVNALQPGLIP 472


>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
          Length = 89

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 337 KAYGVPDIDVFQTVDLWEKKDIXPSXEDTV-CPR 435
           ++ GV  +D+FQTVDL+EK+++  +    + CP+
Sbjct: 29  ESLGVSKVDLFQTVDLYEKQNMAAARAKGLNCPQ 62


>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 197 LRVSSRDGTVLCQLINKLXPGSVPKIN 277
           L  S  DG VLC L+N    G++P I+
Sbjct: 332 LPASLADGVVLCHLVNSAYKGTIPSIH 358


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 343 YGVPDIDVFQTVDLWEKKDI 402
           +GV   D+FQTVDL+EK++I
Sbjct: 713 FGVAKSDLFQTVDLYEKQNI 732


>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 206 SSRDGTVLCQLINKLXPGSV 265
           S RDG +LCQ+ N L PG+V
Sbjct: 54  SLRDGVLLCQVANVLHPGAV 73


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 RDGTVLCQLINKLXPGSVPKI 274
           R G +LC++ NK+   ++PKI
Sbjct: 310 RSGVILCKIANKIKSNAIPKI 330


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 215 PLRTPSNSSTRGEFSSRGTPSNPTXGASLPPFSRVA 108
           P   PS SS R    SRG P  P+ G + PP    A
Sbjct: 327 PPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAA 362


>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
          Length = 491

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +1

Query: 22  SQHFGKK--HSHNSHNMFSGNVKFALRSLPSATLEKGGREA-PXVGLEGV-PRELNSPLV 189
           SQH   K  H     N  SG  ++  + +P A   +GG    P  G +   P  L  PL 
Sbjct: 41  SQHQRNKTVHLEAVTNEDSGK-RYKKQGIPMAAFARGGETGRPKHGPKSHRPNFLMPPLD 99

Query: 190 ELFEGVLKGRHCSLPAHQ 243
           +LF G  + R+   P H+
Sbjct: 100 KLFSGKPENRYMGAPIHR 117


>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
          Length = 718

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 1   GTXAAHHSQHFGKKHSHNSHNMFSGNVKFALRSLPSATLEKGGREAPXVGLE---GVPRE 171
           G    HH+ H G +   N+H +F  N    +  + +AT      +    G++   G+P E
Sbjct: 296 GNAYGHHAFHMGMEEDGNAHGIFLLNSNAMVVKMTTATTSGDEIDPNSTGIQRNLGLPFE 355

Query: 172 LNSPLVELFEG 204
               +V    G
Sbjct: 356 TQIEIVGFVVG 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,302
Number of Sequences: 59808
Number of extensions: 321170
Number of successful extensions: 1043
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)