Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32068
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical pr...    36   0.017
AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.      36   0.017
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    31   0.37 
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    30   0.85 
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    30   0.85 
AC006693-10|AAF60376.1|  578|Caenorhabditis elegans Hypothetical...    28   3.4  
AF039711-7|AAB96713.3|  154|Caenorhabditis elegans Calponin prot...    28   4.6  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   8.0  

>Z79755-6|CAB02104.1|  192|Caenorhabditis elegans Hypothetical
           protein F43G9.9 protein.
          Length = 192

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 212 RDGTVLCQLINKLXPGSVPKINTT 283
           +DG++LC L N L PGSV K+NT+
Sbjct: 61  QDGSLLCTLANSLKPGSVKKVNTS 84


>AF169201-2|AAF01679.1|  192|Caenorhabditis elegans CPN-1 protein.
          Length = 192

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 212 RDGTVLCQLINKLXPGSVPKINTT 283
           +DG++LC L N L PGSV K+NT+
Sbjct: 61  QDGSLLCTLANSLKPGSVKKVNTS 84


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 236 AGKEQCRPLRTPSNSSTRGEFSSRGTPSNPT-XGASLPPFSRVALGSDLSANLT 78
           A K    P +TPS++S R    SRG P+N +   AS P  S  ++    S   T
Sbjct: 71  ASKTPKTPSKTPSSASARSRSRSRGRPTNASRLSASTPSASSTSVKRSRSVTKT 124


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +2

Query: 215 DGTVLCQLINKLXPGSVPKINTTG---GTVQNDGEHHKLXVXQSKHTVYPTSMCSKPWIY 385
           DG  LC+ INKL P S+   ++T     T ++     +      K  V  T++CS+  I 
Sbjct: 550 DGQELCKFINKLHPESISLASSTDSSIATTRSKMNVDRFLQYCRKIGVPETTLCSQMDII 609

Query: 386 GRKKTSXQVVRTLFALGR 439
             K+   +V RT+  + +
Sbjct: 610 S-KRNPQKVARTVLTVAK 626


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 331 AIKAYGVPDIDVFQTVDLWEKK 396
           A K +GV +I  FQTVDL+E K
Sbjct: 100 AAKQFGVMEISCFQTVDLYENK 121


>AC006693-10|AAF60376.1|  578|Caenorhabditis elegans Hypothetical
           protein W02H5.8 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 200 RVSSRDGTVLCQLINKLXPGSVPKINTTGGTVQNDGEHHKLXVXQSKHTVYPTSM 364
           ++  R+G     L+N L   S  ++N   G V    E HK+ + +    +Y TS+
Sbjct: 246 KMEMREGEKFVVLVNNLGSVSQLEMNIVNGEVLRYFEDHKIGITRFFSGIYMTSL 300


>AF039711-7|AAB96713.3|  154|Caenorhabditis elegans Calponin protein
           4 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 200 RVSSRDGTVLCQLINKLXPGSVPKI 274
           R   +DG  LC+L+N +  GSV KI
Sbjct: 55  REQLKDGQRLCKLVNAIKAGSVKKI 79



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 325 SXAIKAYGVPDIDVFQTVDLWEKKDI 402
           S A ++ GV D + FQ+VDL++ +D+
Sbjct: 96  STAARSLGVKDEETFQSVDLFDGRDL 121


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 333 NQSIRCTRHRCVP 371
           N + RCT HRC+P
Sbjct: 235 NATFRCTNHRCIP 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,888
Number of Sequences: 27780
Number of extensions: 233025
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)