Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32068
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   10.0 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 315  TNXQXCNQSIRCTRHRCVPNRGSMGEKRHRXKX*GHCLPS 434
            +N   C++  R T  R + +  +   +RH  +   HC P+
Sbjct: 1659 SNYNTCDRIKRGTVIRSIRSHSTWDPRRHMYEELNHCAPN 1698


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 343 YGVPDIDVFQTVDLWEKKDI 402
           Y   D D+F    LW K +I
Sbjct: 116 YHAKDFDIFFKTALWAKNNI 135


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 343 YGVPDIDVFQTVDLWEKKDI 402
           Y   D D+F    LW K +I
Sbjct: 116 YHAKDFDIFFKTALWAKNNI 135


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 65  CSLGTSSSR*DRFQAQPWRREEGKP 139
           CSLGT+SS      ++   R  G P
Sbjct: 176 CSLGTASSTSSTASSRNSDRSAGSP 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,122
Number of Sequences: 438
Number of extensions: 2590
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)