Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32064
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   0.70 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   3.7  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   4.9  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   4.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    24   6.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    24   8.6  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   8.6  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     24   8.6  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 370 KSSPSITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPSTY 239
           KS   +  + +   S T   S H RP+P+ +TA S + S  S +
Sbjct: 244 KSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANSSSASISSLH 287


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 331 TSKTTWASTHRRPAPRWSTATSHAKST 251
           TS  T +   R    RWS+ +SH+K +
Sbjct: 481 TSSPTGSPIRRTSGNRWSSGSSHSKKS 507


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 31  DYRFCDCLSLSLYSFYAILDPGTQ 102
           DY   D  SL+L   YA+  PG Q
Sbjct: 37  DYYGADSASLNLTQLYALFRPGEQ 60


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 159 WKVHQIVVSVVEDAVDHQ 212
           W  H+I +S+ E A++HQ
Sbjct: 452 WNTHEIQISLKEIAMEHQ 469


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -1

Query: 367 SSPSITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPST 242
           +SP+ ++S+H  +S ++        +   S++ SH+ S PS+
Sbjct: 112 ASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSS 153


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 367 SSPSITASAHRATSKTTWASTH-RRPAPRWSTATSHAKSTPS 245
           S+P +  SAH  +S++  AS+H  RPA   S++ + +    S
Sbjct: 96  SNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSDDVRS 137


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 176 DLVDLPSLAGSW-KQEQVKIIYYDVNC 99
           DL+ LP+  G W K   ++I+ +D+ C
Sbjct: 278 DLISLPA-EGQWSKMAPLRIMSFDIEC 303


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 367 SSPSITASAHRATSKTTWASTHRRPAPRWSTATS 266
           +SP  TA +    SKT  AST ++  P   T  S
Sbjct: 325 TSPPATADSKTIVSKTISASTTQQTEPLQQTTPS 358


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 358 SITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPST 242
           ++  S  +    T   STH  P    STAT+     P T
Sbjct: 159 NVNQSYSKGIDGTALPSTHANPVAAPSTATTQHTQLPKT 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,792
Number of Sequences: 5004
Number of extensions: 23694
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)