Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32064
(370 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 33 0.096
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34) 30 0.67
SB_43198| Best HMM Match : KIX (HMM E-Value=1.4) 27 3.6
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 27 4.8
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95) 27 6.3
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 27 6.3
SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 27 6.3
SB_4253| Best HMM Match : Death (HMM E-Value=2.7) 27 6.3
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4) 26 8.3
SB_1189| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 26 8.3
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 32.7 bits (71), Expect = 0.096
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 367 SSPSITASAHRATSKT---TWASTHRRPAPRWSTATSHAKSTPS 245
S+ + AH+ ++KT T +++RP R S AT H KS+P+
Sbjct: 605 SASLVPVQAHQTSAKTVDQTAIGSNKRPGKRTSPATGHGKSSPA 648
>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
Length = 912
Score = 29.9 bits (64), Expect = 0.67
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 232 FRCTWTGWIWHERSRWTT*GRAAYAWRPTWFWRW 333
FRC W G++ ++ G WRP W WR+
Sbjct: 750 FRCVWNGFVCNK-------GDFLKYWRPFWHWRY 776
>SB_43198| Best HMM Match : KIX (HMM E-Value=1.4)
Length = 209
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 248 VHVHRNHLFPSFLV-VHRVLHHGNHDLVDLPSLAGSWKQEQVKII 117
V N F + LV VH LH +D VDL A + ++E++ II
Sbjct: 77 VQFQYNDQFDNHLVTVHEALHKNVYDTVDLKVKAITKQEEKLSII 121
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 272 DLSCQIHPV--HVHRNHLFPSFLVVHRVLHH 186
D++C IH + HV + V HR+LHH
Sbjct: 243 DMACVIHRLLHHVRKGRTEDMACVTHRLLHH 273
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 272 DLSCQIHPV--HVHRNHLFPSFLVVHRVLHH 186
D++C IH + HV + V HR+LHH
Sbjct: 376 DMACVIHRLLHHVRKGRTEDMACVTHRLLHH 406
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 272 DLSCQIHPV--HVHRNHLFPSFLVVHRVLHH 186
D++C H + HV + V+HR+LHH
Sbjct: 224 DMACVTHRLLHHVRKGRTEDMACVIHRLLHH 254
>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
Length = 837
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 278 HRDLSCQIHPVHVHRNHLFPSFLVVHRVLHHGNHDLVDLPSLAGSWKQEQVKII--YYDV 105
H L + H + + PS + L H HDL+D G K+E K+I Y+++
Sbjct: 341 HAKLIPKYHEIMIKNIEQDPSSEKSCKALRHTTHDLLDGLRDFGQSKEEHAKLIPKYHEI 400
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 349 ASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPSTYI 236
ASA + TW H+ +PR++ A A++ T I
Sbjct: 775 ASAEFSVFAKTWMFEHKTSSPRYAQANGKAENAVQTLI 812
>SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 278 HRDLSCQIHPVHVHRNHLFPSFLVVHRVLHHGNHDLVDLPSLAGSWKQEQVKII--YYDV 105
H L + H + + PS + L H HDL+D G K+E K+I Y+++
Sbjct: 222 HAKLIPKYHEIMIKNIEQDPSSEKSCKALRHTTHDLLDGLRDFGQAKEEHAKLIPKYHEI 281
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 278 HRDLSCQIHPVHVHRNHLFPSFLVVHRVLHHGNHDLVDLPSLAGSWKQEQVKII--YYDV 105
H L + H + + PS ++ L HDL+D +G K+E K+I Y+++
Sbjct: 475 HAKLIPKYHEIMIKTIEQDPSSDKSYKALRDTTHDLLDGLRYSGQAKEEHAKLIPKYHEI 534
>SB_4253| Best HMM Match : Death (HMM E-Value=2.7)
Length = 184
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 278 HRDLSCQIHPVHVHRNHLFPSFLVVHRVLHHGNHDLVDLPSLAGSWKQEQVKII--YYDV 105
H L + H + + PS + L H HDL+D G K+E K+I Y+++
Sbjct: 11 HAKLIPKYHEIMIKNIEQDPSSEKSCKALRHTTHDLLDGLRDFGQAKEEHAKLIPKYHEI 70
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 26.2 bits (55), Expect = 8.3
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 341 ASGHLQNHVGLHA*AARP*VVHRDLSCQIHPVHVHRNHLFPSFLVVHRVLHHGN 180
+SGHL+ H G H+ +P CQ HP HR +P+ L H H G+
Sbjct: 186 SSGHLKYHQGTHS-GEKP------FKCQ-HP-GCHRVFAWPAHLKYHMKTHLGD 230
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 352 TASAHRATSKTTWASTHRRPAPRWSTATSHAKS--TPST 242
T +AH T+ T A T +P P+ T T+ + TP+T
Sbjct: 106 TPTAHTPTTPTPTAHTPTKPTPKTPTPTTPTPTAHTPTT 144
>SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 252
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 212 LVVHRVLHHGNHDLVDLPSLAGSWKQ 135
+V HR HH + DL+ P L +W Q
Sbjct: 11 IVFHR-RHHASRDLILAPRLTDTWHQ 35
>SB_1189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 26.2 bits (55), Expect = 8.3
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -3
Query: 314 GLHA*AARP*VVHR--DLSCQIH-----PVHVHRNHLFPSFLVVHRVLHHGNHDLVDLPS 156
GLHA P VH DL +H P+ +H N P+ L + L G H VDLPS
Sbjct: 120 GLHANVDLPTGVHANVDLPIGLHANVDLPIGLHANVDLPTGLHTNVDLPIGLHANVDLPS 179
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 206 VHRVLHHGNHDLVDLPSLAGSWKQE 132
V RV +HDL D+P+L S+++E
Sbjct: 2920 VQRVEEGASHDLEDVPALKESYEEE 2944
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,618,970
Number of Sequences: 59808
Number of extensions: 184087
Number of successful extensions: 2162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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