Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32064
(370 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein. 31 1.2
BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein. 31 1.2
Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein. 29 6.2
BC004242-1|AAH04242.1| 122|Homo sapiens heterogeneous nuclear r... 29 6.2
AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase ... 29 6.2
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 29 6.2
AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase ... 29 6.2
AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 29 6.2
AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens ... 29 6.2
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 29 6.2
BC131746-1|AAI31747.1| 599|Homo sapiens DOCK3 protein protein. 28 8.2
BC057849-1|AAH57849.1| 241|Homo sapiens DNAJC4 protein protein. 28 8.2
BC044584-1|AAH44584.1| 241|Homo sapiens DNAJC4 protein protein. 28 8.2
BC032137-1|AAH32137.1| 311|Homo sapiens DNAJC4 protein protein. 28 8.2
AY254099-1|AAP80572.1| 2030|Homo sapiens DOCK3 protein. 28 8.2
AY145303-1|AAN12301.1| 2030|Homo sapiens modifier of cell adhesi... 28 8.2
AF036874-1|AAF97845.1| 241|Homo sapiens multiple endocrine neop... 28 8.2
AB002297-1|BAA20759.1| 1907|Homo sapiens KIAA0299 protein. 28 8.2
>X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein.
Length = 1912
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYDV 105
+R + P ++++HR+L+H G+ H L+ DLP SW+ E V+I YD+
Sbjct: 613 YRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDL 666
>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
Length = 1937
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYDV 105
+R + P ++++HR+L+H G+ H L+ DLP SW+ E V+I YD+
Sbjct: 610 YRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDL 663
>Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein.
Length = 279
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 367 SSPSITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPS 245
S+P + ++ TS T+ T RP P ST +S ST S
Sbjct: 34 SAPKSSTTSAATTSTTSGPETTPRPVPTTSTTSSPTTSTTS 74
>BC004242-1|AAH04242.1| 122|Homo sapiens heterogeneous nuclear
ribonucleoprotein U-like 1 protein.
Length = 122
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -1
Query: 358 SITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPSTYI 236
S TAS T W +P P + TAT H PS +
Sbjct: 82 SPTASTSTTTCLQLWELRRLQPGPLYPTATPHRTDLPSAQL 122
>AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYD 108
+R + P ++++HR+L+H G+ H L+ DLP +W+ + + I YYD
Sbjct: 99 YRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYD 151
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYD 108
+R + P ++++HR+L+H G+ H L+ DLP +W+ + + I YYD
Sbjct: 583 YRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYD 635
>AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYD 108
+R + P ++++HR+L+H G+ H L+ DLP +W+ + + I YYD
Sbjct: 99 YRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYD 151
>AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYD 108
+R + P ++++HR+L+H G+ H L+ DLP +W+ + + I YYD
Sbjct: 583 YRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYD 635
>AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens
cDNA FLJ45103 fis, clone BRAWH3032571, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 1225
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYD 108
+R + P ++++HR+L+H G+ H L+ DLP +W+ + + I YYD
Sbjct: 583 YRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYD 635
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Frame = -3
Query: 239 HRNHLFPSFLVVHRVLHH-----GN-HDLV---DLPSLAGSWKQEQVKIIYYD 108
+R + P ++++HR+L+H G+ H L+ DLP +W+ + + I YYD
Sbjct: 583 YRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYD 635
>BC131746-1|AAI31747.1| 599|Homo sapiens DOCK3 protein protein.
Length = 599
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 358 SITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPS 245
S+ +S+ + S ++ +STH P+ ++A S A+ +PS
Sbjct: 528 SVLSSSQASPSSSSLSSTHSAPSQMITSAPSSARGSPS 565
>BC057849-1|AAH57849.1| 241|Homo sapiens DNAJC4 protein protein.
Length = 241
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/91 (25%), Positives = 35/91 (38%)
Frame = -1
Query: 301 RRPAPRWSTATSHAKSTPSTYIEXXXXXXXXXXXXXXXXXXXXXXTFHH*RALGNKSK*K 122
R P R A + +S PSTY E H R GN S
Sbjct: 15 RNPPSRLLGAAAGQRSRPSTYYELLGVHPGASTEEVKRAFFSKSKELHPDRDPGNPSLHS 74
Query: 121 LYITMSIAYQDLISRKMSTTTKKDNRKIYNP 29
++ +S AY+ ++SR+ S + D + +P
Sbjct: 75 RFVELSEAYR-VLSREQSRRSYDDQLRSGSP 104
>BC044584-1|AAH44584.1| 241|Homo sapiens DNAJC4 protein protein.
Length = 241
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/91 (25%), Positives = 35/91 (38%)
Frame = -1
Query: 301 RRPAPRWSTATSHAKSTPSTYIEXXXXXXXXXXXXXXXXXXXXXXTFHH*RALGNKSK*K 122
R P R A + +S PSTY E H R GN S
Sbjct: 15 RNPPSRLLGAAAGQRSRPSTYYELLGVHPGASTEEVKRAFFSKSKELHPDRDPGNPSLHS 74
Query: 121 LYITMSIAYQDLISRKMSTTTKKDNRKIYNP 29
++ +S AY+ ++SR+ S + D + +P
Sbjct: 75 RFVELSEAYR-VLSREQSRRSYDDQLRSGSP 104
>BC032137-1|AAH32137.1| 311|Homo sapiens DNAJC4 protein protein.
Length = 311
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/91 (25%), Positives = 35/91 (38%)
Frame = -1
Query: 301 RRPAPRWSTATSHAKSTPSTYIEXXXXXXXXXXXXXXXXXXXXXXTFHH*RALGNKSK*K 122
R P R A + +S PSTY E H R GN S
Sbjct: 15 RNPPSRLLGAAAGQRSRPSTYYELLGVHPGASTEEVKRAFFSKSKELHPDRDPGNPSLHS 74
Query: 121 LYITMSIAYQDLISRKMSTTTKKDNRKIYNP 29
++ +S AY+ ++SR+ S + D + +P
Sbjct: 75 RFVELSEAYR-VLSREQSRRSYDDQLRSGSP 104
>AY254099-1|AAP80572.1| 2030|Homo sapiens DOCK3 protein.
Length = 2030
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 358 SITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPS 245
S+ +S+ + S ++ +STH P+ ++A S A+ +PS
Sbjct: 1731 SVLSSSQASPSSSSLSSTHSAPSQMITSAPSSARGSPS 1768
>AY145303-1|AAN12301.1| 2030|Homo sapiens modifier of cell adhesion
protein.
Length = 2030
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 358 SITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPS 245
S+ +S+ + S ++ +STH P+ ++A S A+ +PS
Sbjct: 1731 SVLSSSQASPSSSSLSSTHSAPSQMITSAPSSARGSPS 1768
>AF036874-1|AAF97845.1| 241|Homo sapiens multiple endocrine
neoplasia type 1 candidate protein number 18 protein.
Length = 241
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/91 (25%), Positives = 35/91 (38%)
Frame = -1
Query: 301 RRPAPRWSTATSHAKSTPSTYIEXXXXXXXXXXXXXXXXXXXXXXTFHH*RALGNKSK*K 122
R P R A + +S PSTY E H R GN S
Sbjct: 15 RNPPSRLLGAAAGQRSRPSTYYELLGVHPGASTEEVKRAFFSKSKELHPDRDPGNPSLHS 74
Query: 121 LYITMSIAYQDLISRKMSTTTKKDNRKIYNP 29
++ +S AY+ ++SR+ S + D + +P
Sbjct: 75 RFVELSEAYR-VLSREQSRRSYDDQLRSGSP 104
>AB002297-1|BAA20759.1| 1907|Homo sapiens KIAA0299 protein.
Length = 1907
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 358 SITASAHRATSKTTWASTHRRPAPRWSTATSHAKSTPS 245
S+ +S+ + S ++ +STH P+ ++A S A+ +PS
Sbjct: 1608 SVLSSSQASPSSSSLSSTHSAPSQMITSAPSSARGSPS 1645
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,853,037
Number of Sequences: 237096
Number of extensions: 863494
Number of successful extensions: 2012
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2004
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -