Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32064
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    26   6.8  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    26   6.8  
At4g24430.1 68417.m03502 expressed protein                             26   6.8  
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ...    26   9.0  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 76  YAILDPGTQLTS*YIIFTCSCFQEPANDGRSTKSWFP 186
           Y ILDP   +   ++   CSC+ + A +GR + +  P
Sbjct: 309 YKILDPNFSVLG-FMNDICSCYLDLATNGRDSANQLP 344


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 76  YAILDPGTQLTS*YIIFTCSCFQEPANDGRSTKSWFP 186
           Y ILDP   +   ++   CSC+ + A +GR + +  P
Sbjct: 286 YKILDPNFSVLG-FMNDICSCYLDLATNGRDSANQLP 321


>At4g24430.1 68417.m03502 expressed protein
          Length = 487

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 233 NHLFPSFLVVHRVLHHGNHDLVDLPSLAGSWKQEQVKIIYYDVNCVP 93
           +H+ P  L +    H+   D+V       SWK+    +  Y +NC+P
Sbjct: 93  SHVGPISLAMFLSAHYAGEDMVMKVKAGDSWKKVFGPVFTY-LNCLP 138


>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
           similar to GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 619

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 209 VVHRVLHHGNHDLVDLPSLAGSW 141
           ++H   HH +HD+ D  +  G W
Sbjct: 60  IIHHHHHHHHHDIKDGGATTGEW 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,645,627
Number of Sequences: 28952
Number of extensions: 127584
Number of successful extensions: 328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)