Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32062
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140...    27   4.7  
11_01_0771 + 6453130-6454488                                           26   8.2  
09_03_0032 + 11742279-11742398,11743318-11743359,11743394-117435...    26   8.2  

>02_01_0211 -
           1406098-1406227,1406581-1406714,1407241-1407380,
           1407639-1407829,1408853-1409346
          Length = 362

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 9   LHEHWTANLKPLRTSLTRLDTMLXVNLFLXSPPPRAKLL 125
           LH H   +  PL  S  R    L + L + +PPP  +LL
Sbjct: 16  LHHHHRHHRLPLLPSQPRPRPTLRLRLLIPTPPPLRRLL 54


>11_01_0771 + 6453130-6454488
          Length = 452

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 163 VLRLHYLN--LXREFRSLARGGGDXRNRFTXSMVSSLVSEVRNGFRFAVQ 20
           VL+L Y +  L R+ R    GGGD    FT   ++  + + R+G R  V+
Sbjct: 264 VLKLRYRSPRLLRDKRKRG-GGGDVGGEFTRYAMAIFLPDARDGLRGLVE 312


>09_03_0032 +
           11742279-11742398,11743318-11743359,11743394-11743555,
           11743768-11743888,11744104-11744195,11744271-11744371,
           11744592-11744949
          Length = 331

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 27  ANLKPLRTSLTRLDTMLXVNLFLXSPPPRAKLLNSL 134
           + L+PL   L  + T   +N    SP PR+K LN L
Sbjct: 10  SKLQPLTNHLLSVFTSANLNSSSDSPLPRSKYLNHL 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,001,808
Number of Sequences: 37544
Number of extensions: 100516
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)