Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32060
         (511 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q240V5 Cluster: Putative uncharacterized protein; n=1; ...    36   0.53 
UniRef50_A7E8Y7 Cluster: Putative uncharacterized protein; n=1; ...    34   1.6  
UniRef50_Q4HQ44 Cluster: Probable sugar transferase Cj1422c; n=1...    33   5.0  
UniRef50_Q1FMZ6 Cluster: SMC protein-like; n=1; Clostridium phyt...    32   8.7  

>UniRef50_Q240V5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 361

 Score = 35.9 bits (79), Expect = 0.53
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = -1

Query: 469 HKKIFNYSYKNLIKF*KKIV*VYSF---FCFFLNXAIRLP 359
           HK+I NYS++NLIKF + ++ V +F   F F+L+    LP
Sbjct: 159 HKQIINYSFENLIKFIEYVLRVKNFEIPFYFYLDQRYNLP 198


>UniRef50_A7E8Y7 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 137

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 135 LCHRSPCHKFDARNFTNGNICKXG-FKKIGLKPNQIRKSIDFKKKL 269
           LCH   CHK     ++N  +   G FK    KP  I K+ D  KK+
Sbjct: 24  LCHCKDCHKISGATYSNNLVLPEGQFKLESGKPKTITKTADSGKKI 69


>UniRef50_Q4HQ44 Cluster: Probable sugar transferase Cj1422c; n=1;
           Campylobacter upsaliensis RM3195|Rep: Probable sugar
           transferase Cj1422c - Campylobacter upsaliensis RM3195
          Length = 598

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 141 HRSPCHKFDARNFTNGNICKXGFKKIGLKPNQIRKSIDFKK 263
           H+    KF  +N +  N+CK    KI L   +++K +DFK+
Sbjct: 497 HKDELEKFQ-QNISKINLCKDKLAKIALALEKLKKQVDFKR 536


>UniRef50_Q1FMZ6 Cluster: SMC protein-like; n=1; Clostridium
           phytofermentans ISDg|Rep: SMC protein-like - Clostridium
           phytofermentans ISDg
          Length = 1038

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 165 DARNFTNGNICKXGFKKIGLKPNQIRKSIDFKKKLFYNHRSQWPGPKAI 311
           + R +     C+     + L+ NQ+R +++  +K F+  RSQW   KA+
Sbjct: 679 ERRKYATKEECENKHTALLLESNQLRSNLERLEKEFHELRSQWSALKAV 727


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,714,399
Number of Sequences: 1657284
Number of extensions: 7136350
Number of successful extensions: 13846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13844
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)