Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32060
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10820.1 68418.m01257 integral membrane transporter family pr...    28   4.2  
At2g06420.1 68415.m00711 expressed protein                             27   5.5  
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    27   5.5  

>At5g10820.1 68418.m01257 integral membrane transporter family
           protein contains 11 transmembrane domains; similar to
           folate/methotrexate transporter FT1 (GI:5813863)
           {Leishmania donovani};
           lignostilbene-alpha,beta-dioxygenase gene, Synechococcus
           PCC7942, EMBL:AF055873
          Length = 503

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 478 IIYHKKIFNYSYKNLIKF 425
           +IYHKK+  YS++N++ F
Sbjct: 331 LIYHKKLKGYSFRNILFF 348


>At2g06420.1 68415.m00711 expressed protein
          Length = 249

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 183 NGNICKX-GFKKIGLKPNQIRKSIDFKKKLFYN 278
           +G  CK  GF  +G+K   IR+++DFKKK F N
Sbjct: 98  SGFNCKNYGFIHLGIK---IRENLDFKKKHFKN 127


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 235 WLGLRPIFLKPXLQIFPFVKFRA 167
           WLG    FLKP +Q++P  K++A
Sbjct: 145 WLGNSFKFLKPSIQLWPAEKYKA 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,212
Number of Sequences: 28952
Number of extensions: 161127
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)