Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32059
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    28   0.72 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   3.8  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   3.8  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   6.7  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.9  

>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
 Frame = -1

Query: 306 HKFLRFKYW-VLYLKPEAGNL--------RINFLYSIFWFFPKPCILFYTTNMSA--GST 160
           H+ +   +W V Y+  EA NL        RI  + S+  ++P PC+  Y  +  A  G +
Sbjct: 100 HRQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLS 159

Query: 159 NQLPSKY-YSWNFNITI 112
             +  +   +WN  ITI
Sbjct: 160 QTIMRELDPNWNIAITI 176


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 224 IEYKKFIRKFPASGFKYKTQYLNLKNL 304
           +E+ +    F ASG++ + QY+NLK++
Sbjct: 729 MEHNQGANFFVASGYEMEKQYINLKSV 755


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 194 KIHGLGKNQKIEYKKFIRKFP 256
           KIH   +NQ  EYK+ ++K P
Sbjct: 340 KIHNAYENQFDEYKQIVKKLP 360


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 236 FCILFFGFSPNRVFY 192
           FCIL+ GF  N V Y
Sbjct: 87  FCILYVGFGENSVLY 101


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 351 VCAMKNFIRNKKLIGHKFLRFK 286
           VC MK F+ NK    H F R K
Sbjct: 73  VCLMKRFLFNKFFNRHPFTRVK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,112
Number of Sequences: 5004
Number of extensions: 46043
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)