Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32059
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    32   0.24 
02_05_1048 + 33748260-33748433,33748886-33748978,33750174-337503...    29   2.2  
02_02_0333 + 9042393-9043610                                           28   5.1  
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602...    27   6.8  

>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = -1

Query: 240 NFLYSIFWFFPKPCILFYTTNMSAGSTNQLPSKYYSWNFNITIK*ILNNNYI 85
           +F   +  FFP    LFY   +++G  +  P ++YSW+F   +K I+N+NY+
Sbjct: 225 SFSMRVSLFFP----LFYAM-INSGGESLPPREWYSWHFPELVK-IVNDNYV 270


>02_05_1048 +
           33748260-33748433,33748886-33748978,33750174-33750371,
           33750502-33750675,33750769-33750875,33751233-33751564,
           33751654-33752147
          Length = 523

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 415 NVNRYGNHLSPCGLWVMSSYSCMCDEKFYQKQKTDRP 305
           ++++Y +H+SPC   +MS    M D+   Q+Q   RP
Sbjct: 320 HLSKYIDHVSPCDFPLMSKKDGMKDDIANQQQSFSRP 356


>02_02_0333 + 9042393-9043610
          Length = 405

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 159 NQLPSKYYSWNFNI 118
           NQ+PS+YY W F I
Sbjct: 193 NQVPSEYYQWEFTI 206


>02_05_0435 - 28958422-28958665,28959328-28959462,28960056-28960211,
            28960287-28961092,28961177-28961254,28961809-28961883,
            28962127-28962215,28962735-28962843,28963007-28963086,
            28963739-28963794,28963876-28963958,28964049-28964118,
            28964200-28964309,28964395-28964548,28965183-28965382,
            28966175-28966348,28969080-28969277,28970564-28970791
          Length = 1014

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 328  DKIFHRTYRSMSSLPTAHRVISGYRSDSHYNLSTDTHLGIP 450
            D++FH +  + SS  T H    GY + ++  L+  +  G P
Sbjct: 891  DRLFHASTLTESSASTGHVTYDGYHNANYSQLNFQSRHGQP 931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,223
Number of Sequences: 37544
Number of extensions: 255993
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)