Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32059
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                 28   5.3  
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                  28   5.3  
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)             27   6.9  

>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 541

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 379 HRVISGYR--SDSHYNLSTDTHLGI-PNLMPVS 468
           +R+ISG R   D+HYNL   THL + P  + VS
Sbjct: 506 YRLISGTRIKRDTHYNLRRVTHLVVSPQTLTVS 538


>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 476

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 379 HRVISGYR--SDSHYNLSTDTHLGI-PNLMPVS 468
           +R+ISG R   D+HYNL   THL + P  + VS
Sbjct: 441 YRLISGTRIKRDTHYNLRRVTHLVVSPQTLTVS 473


>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
          Length = 810

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 331 KIFHRTYRSMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPVSL 471
           KIF + ++ ++ +P+A +VIS  +      L  +T LG+P    V L
Sbjct: 681 KIFIK-FKGLTGVPSAEQVISEKKKKKKSILPPETQLGLPKQEHVKL 726


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,667
Number of Sequences: 59808
Number of extensions: 314739
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)