Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32059
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF326787-1|AAK38268.1| 417|Caenorhabditis elegans CLN-3.3 protein. 30 1.1
AF078788-5|AAC26960.2| 417|Caenorhabditis elegans Human cln (ne... 30 1.1
Z82084-1|CAB04978.1| 398|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 28 4.6
Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical pr... 27 8.0
U96695-1|AAB57697.1| 491|Caenorhabditis elegans deoxyuridinetri... 27 8.0
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 27 8.0
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein. 27 8.0
>AF326787-1|AAK38268.1| 417|Caenorhabditis elegans CLN-3.3 protein.
Length = 417
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 303 KFLRFKYWVLYLKP--EAGNLRINFLYSIFWFFPKPCILF 190
+ + W+LYL P + N+ F +++WF P+ I+F
Sbjct: 312 RLVELPMWMLYLLPFLQLTNMLFFFFDALYWFVPQIAIIF 351
>AF078788-5|AAC26960.2| 417|Caenorhabditis elegans Human cln
(neuronal ceroid lipofuscinosis)related protein 3.3
protein.
Length = 417
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 303 KFLRFKYWVLYLKP--EAGNLRINFLYSIFWFFPKPCILF 190
+ + W+LYL P + N+ F +++WF P+ I+F
Sbjct: 312 RLVELPMWMLYLLPFLQLTNMLFFFFDALYWFVPQIAIIF 351
>Z82084-1|CAB04978.1| 398|Caenorhabditis elegans Hypothetical
protein ZK1053.1 protein.
Length = 398
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -1
Query: 252 NLRINFLYSIFWFFPKPCILFYTTNMSAGSTNQLP--SKYYSWN-FNITIK*ILNNNYIA 82
+L + LYSI F+P+ + N+SA + +LP KY+ + FN ++ +N+
Sbjct: 150 DLSLKSLYSIRKFYPRHKYILNGMNISASYSEKLPKNDKYFEFRVFNTSLYPEFVSNWST 209
Query: 81 Y 79
Y
Sbjct: 210 Y 210
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 321 KKLIGHKFLRFKYWVLYLKPEAGNLRINFLYSIFWFFPKPCILFYTTNMS 172
+ ++G+ FLR WV+ L GN+ + L I + Y NMS
Sbjct: 424 ENIVGYPFLRIAVWVVCLAAIVGNIIVWALLGIVYEKRMRMHYLYMINMS 473
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 321 KKLIGHKFLRFKYWVLYLKPEAGNLRINFLYSIFWFFPKPCILFYTTNMS 172
+ ++G+ FLR WV+ L GN+ + L I + Y NMS
Sbjct: 424 ENIVGYPFLRIAVWVVCLAAIVGNIIVWALLGIVYEKRMRMHYLYMINMS 473
>Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical
protein K07A1.2 protein.
Length = 491
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 322 VSDKIFHRTYRSMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPVSL 471
+ ++I + TY + SLP+ +R G+ S ++++T NL +++
Sbjct: 138 ICEQIGNGTYEEVKSLPSTNRGAGGFGSTGESTMNSETANPATNLERITV 187
>Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical
protein F07B10.1 protein.
Length = 424
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 303 KFLRFKYWVLYLKP--EAGNLRINFLYSIFWFFPKPCILF 190
KF W+++ P + N+ F +++WF P I+F
Sbjct: 318 KFFEMPLWLIWCLPILQCVNMIFFFFEAVYWFTPTIIIIF 357
>U96695-1|AAB57697.1| 491|Caenorhabditis elegans
deoxyuridinetriphosphatase protein.
Length = 491
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 322 VSDKIFHRTYRSMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPVSL 471
+ ++I + TY + SLP+ +R G+ S ++++T NL +++
Sbjct: 138 ICEQIGNGTYEEVKSLPSTNRGAGGFGSTGESTMNSETANPATNLERITV 187
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 370 PTAHRVISGYRSDSHYNLSTDTHLGIPNL 456
P HR GY S S +NLS +LG ++
Sbjct: 553 PPRHRSNLGYESTSMFNLSDPVYLGYDSI 581
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 370 PTAHRVISGYRSDSHYNLSTDTHLGIPNL 456
P HR GY S S +NLS +LG ++
Sbjct: 553 PPRHRSNLGYESTSMFNLSDPVYLGYDSI 581
>AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein.
Length = 424
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 303 KFLRFKYWVLYLKP--EAGNLRINFLYSIFWFFPKPCILF 190
KF W+++ P + N+ F +++WF P I+F
Sbjct: 318 KFFEMPLWLIWCLPILQCVNMIFFFFEAVYWFTPTIIIIF 357
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,069,156
Number of Sequences: 27780
Number of extensions: 249338
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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