Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32059
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   3.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   3.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   3.3  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   10.0 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   10.0 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   10.0 

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 355 SCMCDEKFY 329
           SC CD+KFY
Sbjct: 88  SCDCDDKFY 96


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 355 SCMCDEKFY 329
           SC CD+KFY
Sbjct: 93  SCDCDDKFY 101


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 355 SCMCDEKFY 329
           SC CD+KFY
Sbjct: 93  SCDCDDKFY 101


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 355 SMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPVSLDVS*NSPP 495
           S  S  T H   + Y+   +YN++    + +P  +PV +    N PP
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYYG-NFPP 128


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 355 SMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPVSLDVS*NSPP 495
           S  S  T H   + Y+   +YN++    + +P  +PV +    N PP
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYYG-NFPP 128


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 355 SMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPVSLDVS*NSPP 495
           S  S  T H   + Y+   +YN++    + +P  +PV +    N PP
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYYG-NFPP 128


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 355 SMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPVSLDVS*NSPP 495
           S  S  T H   + Y+   +YN++    + +P  +PV +    N PP
Sbjct: 316 SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYYG-NFPP 361


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 287 LNLKNLWPISFLFL 328
           LN+KN++P+ F+ +
Sbjct: 2   LNMKNIFPVLFVII 15


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 430 DTHLGIPNLMPVSLDVS*NSPPL 498
           D H G+P L  +  D     PP+
Sbjct: 205 DDHYGVPTLEELGFDTEGLLPPV 227


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 233 CILFFGFSPNRVFYFIQQT*VRVQRTSCRVNIIVG 129
           C + +  +PN   Y+I +   R+ R+S   +   G
Sbjct: 108 CNIQYALNPNTEEYYIIEVNARLSRSSALASKATG 142


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 355 SMSSLPTAHRVISGYRSDSHYNLSTDTHLGIPNLMPV 465
           S  S  T H   + Y+   +YN++    + +P  +PV
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPIPV 119


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 388 ISGYRSDSHYNLSTDTHLGIPNLMPVSLDV 477
           IS Y +D++YN     ++     +PV + V
Sbjct: 93  ISNYNNDNNYNKKLYYNINYIEQIPVPVPV 122


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 204 PCILFYTTNMSAGSTNQLPSKYYSWNFN 121
           P  L Y T   +   N L + Y +W++N
Sbjct: 85  PLTLGYVTREVSIDGNPLIAPYPNWSYN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,825
Number of Sequences: 438
Number of extensions: 3422
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)