Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32051
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    87   5e-19
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   7.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    23   9.8  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    23   9.8  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 87.4 bits (207), Expect = 5e-19
 Identities = 37/54 (68%), Positives = 41/54 (75%)
 Frame = +2

Query: 53  MGHANIWYSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 214
           M H N+W+SHPR YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 95  GQGSRSCRSCSNRHGLIRKYGLNICRQC 178
           G GS    +  N+ G +  +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 147 RIKPCLLEQDRHDRDPCPXLRG*EYQI 67
           R  P LLE  ++  D CP  +G  YQ+
Sbjct: 438 RSNPTLLEFMQYHIDHCPAEKGETYQL 464


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 186 SLKHCLHMFKPYLRIKP 136
           S+K C     PYL +KP
Sbjct: 54  SMKRCRETIAPYLELKP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,519
Number of Sequences: 5004
Number of extensions: 20874
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)