Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32051
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  
SB_32728| Best HMM Match : Astacin (HMM E-Value=0)                     27   5.3  
SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5)                   26   9.2  
SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 177 HCLHMFKPYLRIKPCLLEQDRHD 109
           H LH   P    KPCLL+ D H+
Sbjct: 318 HGLHFGSPARARKPCLLDHDEHE 340


>SB_32728| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 321

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 60  TQIFGILTLAXTDKDPGHADPAPTGMA*SASTV 158
           + IF  LTL  TD D  H+D  P G A  A  +
Sbjct: 22  SDIFDDLTLEETDLDLPHSDLPPEGFAGDAREI 54


>SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 95  GQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 220
           G+ +R   +C +   ++   G N+CR C   + +D   + +D
Sbjct: 59  GESARF-EACCDGQDMVNDNGANVCRNCGVHHGYDYAVEYVD 99


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 92  YGQGSRSC--RSCSNRHGLIRKYGLNICRQCFREYAHD 199
           Y +GS  C  +SC   +    +YG N C  C   Y+ D
Sbjct: 144 YDRGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQD 181


>SB_6004| Best HMM Match : zf-B_box (HMM E-Value=4.5)
          Length = 279

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 104 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 217
           ++ C++C   H L RK+G+   +Q   E    I  K+L
Sbjct: 230 NKHCKNCRKIHELARKHGIFQIKQLINEQRIWISEKEL 267


>SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 197 HEHTL*STVCICSNRTCGLSHACWSRI--GMTGILVRXCEGE 78
           H H    ++ + SN T G + +CW+ +  G+  + V+    E
Sbjct: 32  HRHVRKESLWVLSNLTAGPAESCWAVVHAGLVPVTVKMLASE 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,523,016
Number of Sequences: 59808
Number of extensions: 177752
Number of successful extensions: 366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)