Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32049
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 50 1e-06
At2g47500.1 68415.m05929 kinesin motor protein-related 49 2e-06
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 47 7e-06
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 44 8e-05
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 44 8e-05
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 42 2e-04
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 39 0.002
At5g41310.1 68418.m05020 kinesin motor protein-related 38 0.004
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 35 0.028
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 35 0.037
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 34 0.065
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 33 0.11
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 33 0.15
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa... 31 0.46
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 29 2.5
At3g49210.1 68416.m05378 expressed protein 28 3.2
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 28 4.3
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 27 5.7
At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family prote... 27 5.7
At4g38560.1 68417.m05459 expressed protein 27 7.5
At5g01030.2 68418.m00006 expressed protein 27 9.9
At5g01030.1 68418.m00005 expressed protein 27 9.9
At3g52930.1 68416.m05834 fructose-bisphosphate aldolase, putativ... 27 9.9
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 27 9.9
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 27 9.9
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 27 9.9
>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
GB:AAB61066
Length = 1010
Score = 49.6 bits (113), Expect = 1e-06
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 19/128 (14%)
Frame = +2
Query: 116 EAQEWIE---GVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPK--------- 247
EA W+ GV+G + P + E+ L+ G +LC ++N++KPG+VPK
Sbjct: 59 EAARWVRNTLGVVGGRDLPADPSEEDFRIALRSGILLCNVLNRVKPGAVPKVVEAPNDPL 118
Query: 248 INTTG---GQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRET 418
+N G F+ EN+ NF ++ G+P F+ D + A++V + AL ++
Sbjct: 119 VNQDGAALSAFQYFENLRNFLVFVEEMGIP---TFEVSDFEKGGKSARIVECVLAL--KS 173
Query: 419 YRHAEWSG 442
YR + SG
Sbjct: 174 YREWKQSG 181
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 48.8 bits (111), Expect = 2e-06
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Frame = +2
Query: 41 QSHNMSLERQVRAKIASKRNPXKEKEAQEWIE---GVLGAKFPPGELFEDVLK----DGT 199
Q H L ++ + EA W+ GV+GAK P E E+ L+ G
Sbjct: 24 QQHGNGLRDHDLVSRRAEEAASRRYEAANWLRRMVGVVGAKDLPAEPTEEGLRLGLRSGI 83
Query: 200 VLCQLINKLKPGSVPKI------------NTTGGQFKMMENITNFQSAIKAYGVPDIDVF 343
+LC+++NK++PG+V K+ F+ EN+ NF AI+ G P F
Sbjct: 84 ILCKVLNKVQPGAVSKVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP---TF 140
Query: 344 QTVDLWEKKDIAQVVSTLFAL 406
+ DL + + ++VV+ + A+
Sbjct: 141 EASDLEQGGNASRVVNCVLAI 161
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 47.2 bits (107), Expect = 7e-06
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Frame = +2
Query: 116 EAQEWIEGVLGA---KFPPGELFEDV----LKDGTVLCQLINKLKPGSVPKI-----NTT 259
EA W+ ++G K PGE E+ L+ G VLC ++NK+ PGSV K+ +
Sbjct: 49 EAAGWLRDMIGVSNGKDFPGEPSEEEFRLGLRSGIVLCNVLNKVNPGSVSKVVEAPDDVA 108
Query: 260 GG----QFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 406
G F+ ENI NF AI+ G+P F+ D+ + ++V+ + AL
Sbjct: 109 DGAALSAFQYFENIRNFLVAIEEMGLPS---FEASDMEKGGKSIRIVNCILAL 158
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 43.6 bits (98), Expect = 8e-05
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +2
Query: 125 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 289
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 290 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 406
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 43.6 bits (98), Expect = 8e-05
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +2
Query: 125 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 289
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 290 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 406
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Frame = +2
Query: 116 EAQEWIEGVLGA----KFPPGELFEDVLKDGTVLCQLINKLKPGSVPKI----NTTGGQF 271
+A +W++ V+G P + F L++G +LC INK+ PG+V K+ + G++
Sbjct: 24 QAVQWLKSVVGQLGIPNQPSEKEFISCLRNGMILCNAINKIHPGAVSKVVENYSYLNGEY 83
Query: 272 KM------MENITNFQSAIKAYGVPDIDVFQ-TVDLWEKKDIAQVVSTLFAL 406
++ EN+ NF A++ +P + D E + +VV + L
Sbjct: 84 QLPPAYQYFENVRNFLVALETLRLPGFEASDLEKDNLESGSVTKVVDCILGL 135
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2
Query: 158 PPGELFEDVLKDGTVLCQLINKLKPGSVPK--INT--TGGQFKMMENITNFQSAIKAYGV 325
P F D++KDG +LC+LIN PG++ + INT T ++ EN+T ++ KA G
Sbjct: 150 PATNAFFDLVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGC 209
Query: 326 PDIDV 340
+++
Sbjct: 210 TVVNI 214
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 37.9 bits (84), Expect = 0.004
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 125 EWIEGVLGAKFPPGELFEDVLK----DGTVLCQLINKLKPGSVPKINTTGGQFKM-MENI 289
EW+ L P E E+ L+ DGTVLC L+N+L PGS+ GG F+ NI
Sbjct: 48 EWLNETLPYLNLPWEASEEELRACLVDGTVLCNLLNQLSPGSM----RMGGSFEPGCVNI 103
Query: 290 TNFQSAIKAYGVP 328
F +A+ +P
Sbjct: 104 ERFLAAMDEMTLP 116
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 35.1 bits (77), Expect = 0.028
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +2
Query: 29 KALTQSHNMSLERQVRAKIASKRNPXKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLC 208
K T + + S+ +A S N + E ++ L LF D++KDG +LC
Sbjct: 104 KTSTTTFHHSINESEKASYVSHINSYLKDEPN--LKSYLPINPTTNALF-DLVKDGVLLC 160
Query: 209 QLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDIDV 340
+LIN PG++ + INT ++ EN++ ++ KA G +++
Sbjct: 161 KLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIGCTVVNI 208
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 34.7 bits (76), Expect = 0.037
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +2
Query: 167 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 334
+LFE V KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 156 DLFE-VAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIGCTVV 214
Query: 335 DV 340
++
Sbjct: 215 NI 216
Score = 33.5 bits (73), Expect = 0.086
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +2
Query: 5 AHHLNTRXKALTQSHNMSLERQVRAKIASKRNPXKEKEAQEWIEGVLGAKFPPGELFEDV 184
AH R TQ+ +S + I R +EK + WI G+ + +FED
Sbjct: 365 AHIFQHRNGLSTQTKQISFLENLADDIQISR---EEKAFRFWINSFDGSVYI-NNVFED- 419
Query: 185 LKDGTVLCQLINKLKPGSV 241
L+DG +L Q ++K+ PG V
Sbjct: 420 LRDGWILLQTLDKVSPGIV 438
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 33.9 bits (74), Expect = 0.065
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 158 PPGELFEDVLKDGTVLCQLINKLKPGSVPKI 250
P + F L++G +LC ++NK+ PGSV K+
Sbjct: 13 PSEDEFSLALRNGLILCNVLNKVNPGSVLKV 43
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 33.1 bits (72), Expect = 0.11
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 167 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 334
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 155 QLYE-LVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 213
Query: 335 DVFQTVDLWE 364
++ T DL E
Sbjct: 214 NI-GTQDLAE 222
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 32.7 bits (71), Expect = 0.15
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 167 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 334
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 156 DLYE-LVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 214
Query: 335 DVFQTVDLWE 364
++ T DL E
Sbjct: 215 NI-GTQDLAE 223
>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
family protein contains similarity to inositol
polyphosphate 5-phosphatase I (GI:10444261) and II
(GI:10444263) [Arabidopsis thaliana]; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 437
Score = 31.1 bits (67), Expect = 0.46
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = -1
Query: 255 VLILG-TEPGFSLLMSWQRTVPSLRTSSNSSPGGNLAPRTPSIHSWAS-FSXSGLRLEAI 82
VL+LG EP W + S+SS GG L+P+TPS + + F+ L+ +
Sbjct: 57 VLVLGDNEPA----AKWLAMINQSLNKSSSSSGGRLSPKTPSFGAGSMFFAKPSLKKISE 112
Query: 81 LART*RSRDM-LCDCVSAFXRVLR 13
RT R + +C+C + ++R
Sbjct: 113 SFRTECRRKLKICNCSTFSEDIVR 136
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 80 KIASKRNPXKEKEAQEWIEGVL----GAKFPPGELFEDVLKDGTVLCQ-LINKLKPGSVP 244
KIASK + +K+ ++ I+ + G + + FED +K+ LC +I ++ G+ P
Sbjct: 563 KIASKLDAADKKKIEDAIDQAIEWLDGNQLAEADEFEDKMKELESLCNPIIARMYQGAGP 622
Query: 245 KINTTGG 265
+ GG
Sbjct: 623 DMGGAGG 629
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 375 MSFFSHRSTVWNTSMSGTPYALIADWKFVM--FSIILNCPPVVLILGTEPGFSLLMSWQR 202
+SF+ H T S+ G P+AL ++ M +I L P V+ ++P LL W++
Sbjct: 445 ISFYGHPITYMAPSVYGHPHALTMHFQSYMNQMTISLTVDPTVI---SDP-HRLLDDWEK 500
Query: 201 TVPSLRTS 178
++ S++ +
Sbjct: 501 SLQSIKAA 508
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +2
Query: 194 GTVLCQLINKLKPGSVP--KIN-TTGGQFKMMEN 286
G V CQL++ + PG+VP K+N +++M++N
Sbjct: 40 GAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQN 73
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +2
Query: 197 TVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 376
+V Q + L G VP ++T ++ IT + A V +F D+ +++ I
Sbjct: 375 SVFVQAASGLVFGVVPFVSTRS--LGVVAGITGSGGTVGAV-VTQFLLFSGDDVRKQRSI 431
Query: 377 AQV--VSTLFALGRETYRHAEWSGPCLGPKPADE 472
+ + ++ +FAL + +W G C GP + E
Sbjct: 432 SLMGLMTFVFALSVTSIYFPQWGGMCCGPSSSSE 465
>At1g78210.1 68414.m09114 hydrolase, alpha/beta fold family protein
low similarity to hydrolases from Rhodococcus sp. EtbD2
GI:3273241, EtbD1 GI:3273239; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 314
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 185 LKDGTVLCQLINKLKPGSVPKIN 253
LKDGTV+ ++K KP S PK N
Sbjct: 31 LKDGTVVNFWVSKTKPESKPKPN 53
>At4g38560.1 68417.m05459 expressed protein
Length = 521
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 2 AAHHLNTRXKALTQSH----NMSLERQVRAKIASKRNPXKEKEAQEWIEGVLGAKFPPGE 169
AAHH + + + +M LER+ KI + KEKEA+++ +GV+ GE
Sbjct: 431 AAHHYDGHETTVVEKEGRERDMLLEREEMKKIQEEVR-LKEKEAKDFRKGVMEMAGRLGE 489
Query: 170 L 172
L
Sbjct: 490 L 490
>At5g01030.2 68418.m00006 expressed protein
Length = 744
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 378 PK*SAHCLPSVVRLTDTRNGAAPASDPSPLTNANVTFSDE 497
PK S LPS R + +S+P P+TN+NV DE
Sbjct: 435 PKASESVLPSKAR--------SSSSNPKPITNSNVPLQDE 466
>At5g01030.1 68418.m00005 expressed protein
Length = 744
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 378 PK*SAHCLPSVVRLTDTRNGAAPASDPSPLTNANVTFSDE 497
PK S LPS R + +S+P P+TN+NV DE
Sbjct: 435 PKASESVLPSKAR--------SSSSNPKPITNSNVPLQDE 466
>At3g52930.1 68416.m05834 fructose-bisphosphate aldolase, putative
similar to SP|O65735|ALF_CICAR Fructose-bisphosphate
aldolase, cytoplasmic isozyme {Cicer arietinum},
cytosolic aldolase [Fragaria x ananassa] GI:10645188;
contains Pfam profile PF00274 Fructose-bisphosphate
aldolase class-I
Length = 358
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 134 EGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTG 262
E L K G+LF D+LK+G VL + K+ G+V T G
Sbjct: 76 EETLYQKSSDGKLFVDILKEGGVLPGI--KVDKGTVELAGTDG 116
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 210 WQRTVPSLRTSSNSSPGG 157
W+RT+P LRTS + GG
Sbjct: 484 WERTLPRLRTSLDGKIGG 501
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 210 WQRTVPSLRTSSNSSPGG 157
W+RT+P LRTS + GG
Sbjct: 484 WERTLPRLRTSLDGKIGG 501
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 210 WQRTVPSLRTSSNSSPGG 157
W+RT+P LRTS + GG
Sbjct: 484 WERTLPRLRTSLDGKIGG 501
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,982
Number of Sequences: 28952
Number of extensions: 277871
Number of successful extensions: 835
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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