Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32048
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 1.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 2.2
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 2.9
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 26 3.8
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 3.8
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 25 6.7
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 6.7
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 6.7
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 8.9
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 8.9
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 25 8.9
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 8.9
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 259 VLLLYPYTNNLAPSFSSSW--LWYFIWKLLQIPRRYKLTGVCGVIS 128
V+L Y YTN L+ S SW + I + + RY + + GV++
Sbjct: 225 VVLAYQYTNMLSASLLDSWATVAVVILSFIFLKVRYHWSQILGVVA 270
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = -3
Query: 328 QDDKSIRPKGHHPLLSHILVFSNVLLLYPYTNNLAPSFSSSWLWYFIWKLLQIPRRYKLT 149
+DD S LLS + F+ V+ L T N P FS L ++ L+ RY LT
Sbjct: 572 KDDLSSSTSCVMDLLSSLCSFTEVMNLMQETANSDPEFSFETLVPRLFHLM----RYTLT 627
Query: 148 GV 143
GV
Sbjct: 628 GV 629
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 388 VHVITHRIRFYIMFWNIFFDW 450
+H T +RF + F NI FDW
Sbjct: 487 IHRPTFILRFILSFVNILFDW 507
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 310 LWICRLVFTVSISVVCGFIITNISPRVHVITHRIRFYI 423
+W+ R+++ + ++V C F+I+ H RI I
Sbjct: 131 VWLIRILYWIFVAVACIFVISLFYSLFHAHPFRINTII 168
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 351 GLWFYYHQYQSTSPRNHT*N*VLYYVLEYI 440
GL+ Y +Q T P T V+YYV E +
Sbjct: 610 GLYLLYDIWQRTMPEEGTLASVMYYVAEQV 639
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -3
Query: 292 PLLSHILVFSNVLLLYPYTNNLAPSFSSSWLWYFIWKLLQIPRRYKLTGVCGVI 131
P S I +++ LL NN+ F+ SWL+++IW L +P +++ C V+
Sbjct: 129 PNQSSITMYTGRLL----NNNIG--FAQSWLYFWIW-LTVLPS--EISAACEVV 173
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 123 PPLMTPQTPV-NLYRLGICKSFQMKYQSQEEL 215
P L+T T + +LY + +C F KY Q+E+
Sbjct: 753 PDLLTEVTDLPDLYSMSLCVVFFHKYNFQDEV 784
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 438 YIPKHNIKPNSMCDYVDSWT 379
Y K+ +KPNS C +D +T
Sbjct: 279 YEKKYPVKPNSQCSGIDFFT 298
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 310 RPKGHHPLLSHILVFSNVL 254
RP +P LSH V++NVL
Sbjct: 49 RPTSRYPTLSHEPVYTNVL 67
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 173 LQKLPNEVPKPRGTKAGSQIICVRVQQ 253
L LP E PR T + +C+RV +
Sbjct: 141 LSVLPEEASDPRKTSLSWEELCIRVDE 167
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 295 HP-LLSHILVFSNVLLLYPYTNNLAPSFSSSW 203
HP LL+ ++VFS + ++ LAP++ W
Sbjct: 111 HPVLLAIVVVFSTLSIVLTILKYLAPAYIRQW 142
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -1
Query: 273 WCSQMYYCCTRTQIIWLPALVP 208
W + YYC T WL L P
Sbjct: 34 WTAPWYYCLTTLFFTWLIILYP 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,005
Number of Sequences: 5004
Number of extensions: 45058
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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