Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32048
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35178| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         27   6.9  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               27   9.2  

>SB_35178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 262 LRTPRYAIVRDGAPLALWICRLVFTVSISVVCGFIITN 375
           LR+P +A+ + GA  A++I    +   IS  CG++I+N
Sbjct: 4   LRSPVHAVTKLGAKRAMFIHTFCWARVISPCCGWVISN 41


>SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 223 PSFSSSWLWYFIWKLLQIP 167
           P F S W WYF WK L  P
Sbjct: 44  PGFGSEWFWYF-WKGLHRP 61


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +3

Query: 99   DTYEGAAFPPLMTPQTPVNLYRLGICKSFQMKYQSQEELKLGAKLFVYGYS---NSTFEN 269
            DT+    +   +  + P N +   +    +  Y+ +E L + AK+   G S   N   + 
Sbjct: 2391 DTWSREVYTLCLNNKQPYNFH---VVNKSETVYKFKEFLVIEAKIAKKGKSSQENWCRDY 2447

Query: 270  TKICDSKGWCPFGLMDLSSCFYR 338
             ++C+S G  PFG     +C  R
Sbjct: 2448 QRVCESFGSVPFGCRQYPTCTLR 2470


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
 Frame = -2

Query: 380 LILVIIKPQTTLILTVKTRRQIHKAKGAPSLTIAYLGVLKCTIAVPVHK*F--GSQXXXX 207
           +I+VII+    L+LTV   R  HK    P   +  L +  C       K F  G +    
Sbjct: 264 IIVVIIETAAILLLTVIVLRCFHKEGTPPQWLLKVLRLGGCVCVGTPRKVFVKGKEAEDL 323

Query: 206 XXXXXXLEAFADSQAVQVNWGLWSHQWGKSCTFICVI 96
                   +  ++   Q  W   S +      FIC I
Sbjct: 324 DDKVAQDNSGLEATETQARWQSVSERLDVIFFFICAI 360


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 157 KLTGVCGVISGGKAAPSYVSLNSKYLN 77
           KLTG+C + SGG   P  V   + Y++
Sbjct: 177 KLTGICSLTSGGAMMPVVVLPTNVYMS 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,349,207
Number of Sequences: 59808
Number of extensions: 329851
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)