Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32048
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    27   7.5  
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    27   7.5  
At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At1g09260.1 68414.m01034 DNAJ heat shock N-terminal domain-conta...    27   9.9  

>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 289 LLSHILVFSNVLLLYPYTNNLAPSFSSSWLWYFIWKLLQIPRRYKLTGVCGVIS-GGKAA 113
           +L  +L F+  ++L      L   F +  L   +W  L IPR ++   V GV+S   K  
Sbjct: 690 VLMIVLGFNEFMMLLKNPLYLLGFFVAFLLSKALWVQLDIPREFQHGAVAGVLSITSKFL 749

Query: 112 PSYVSLNSK 86
           P+ ++L  K
Sbjct: 750 PTVMNLLRK 758


>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 161 PPGNLQKLPNEVPKPRGTKA 220
           PPG+L +LP   P P+GT A
Sbjct: 249 PPGHLLQLPLPPPLPQGTSA 268


>At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 511

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 210 ELKLGAKLFVYGYSNSTFENTKICDS--KGWCPFGLMDLSSCFYRE 341
           EL++G +L  Y   N  F+N  +C++  + +   G++D++   + E
Sbjct: 230 ELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEE 275


>At1g09260.1 68414.m01034 DNAJ heat shock N-terminal
           domain-containing protein low similarity to similar to
           SP|Q9QYI4 DnaJ homolog subfamily B member 12 Mus
           musculus; contains Pfam profile PF00226 DnaJ domain
          Length = 138

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 295 HPLLSHILV---FSNVLL-LYPYTNNLAPSFSSSWLWYFIWKLLQIPRRYK 155
           +P  SH ++   + ++L+ LYP TN    + S+  +  + WK+L  P + K
Sbjct: 79  NPFCSHQMIQRKYRDILVKLYPDTNKSIAAKSAFEIINYAWKILSDPEKRK 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,866,686
Number of Sequences: 28952
Number of extensions: 231712
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)