Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32045
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   3.2  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   3.2  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    24   7.5  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.8  

>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 96  AIVILLSTRRNRSFGHLVHALGRAAGGAKLPSAGLCLNAXKAEAS 230
           A+V+   T   +SF  L + +  A G +K+P A + L   + E S
Sbjct: 145 AVVLKGGTESAKSFAALSNVVRSALGKSKVPQAAVQLVQSREEVS 189


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 168 AGGAKLPSAGLCLNAXKAEASLAESGKDMLTVEPRESGGSKQ 293
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 167 RSAECMNQMSETAVPPRTEQYYYRND 90
           R  E  +Q ++  +PP T +  YRN+
Sbjct: 98  RFVELFSQCADALMPPPTVEINYRNE 123


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 129 RSFGHLVHALGRAAGGAKLPSAGLCLNAXK 218
           +S G +VHA  RAA    +  A  CL   K
Sbjct: 65  KSRGRVVHACSRAALPRAIADASHCLEEKK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,985
Number of Sequences: 5004
Number of extensions: 18926
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)