Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32045
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98...    29   0.95 
07_03_0626 + 20060013-20060273,20061017-20061274                       29   1.3  
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    29   1.3  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     27   2.9  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    27   3.9  
11_01_0731 - 6060680-6060982                                           27   5.1  
06_01_0292 + 2136637-2137050,2137162-2137671                           27   5.1  
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014     27   5.1  
05_02_0165 - 7256178-7256444                                           27   5.1  
02_02_0240 + 8196140-8198248,8198381-8198650                           26   6.7  
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386     26   6.7  
09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356     26   8.9  
03_05_1088 + 30301654-30303480                                         26   8.9  

>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
            990244-990510,990840-992458,992571-993327,993560-995506
          Length = 1727

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 145  KCPKLRFLLVLSSITIATTSHQ*GKTNLSHDG 50
            KCP+++FLL+  S   AT+S    +T  + DG
Sbjct: 1299 KCPQIKFLLISQSTGEATSSLASAETTSARDG 1330


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 237 RLGWLRPXRRSGIIP 193
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 225 ASLAESGKDMLTVEPRESGGSKQCDFTSRVXHSKRETRR 341
           A+ A +GK +   E  E   S+QCD T  + +S RE +R
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREKKR 468


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 138 GHLVHALGR-AAGGAKLPSAGLCLNAXKAEASLA 236
           G LV  L R   GG    SAG+C    + +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 153 ALGRAAGGAKLPSAGLCLNAXKAEASLA 236
           ALG     A  P  G CLN  K+EASLA
Sbjct: 206 ALGLMPSSAASPQLG-CLNVLKSEASLA 232


>11_01_0731 - 6060680-6060982
          Length = 100

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 138 GHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESG 245
           G   HALG   GG +  +AG C      E ++   G
Sbjct: 8   GSATHALGSDNGGRRAAAAGACDGDVAGEEAMGHGG 43


>06_01_0292 + 2136637-2137050,2137162-2137671
          Length = 307

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +3

Query: 84  WLVVAIVILLSTRRNRSFGHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDMLTV 263
           W      I+   RR+++  H   A+G   GG ++       +   A A  + SGK    +
Sbjct: 35  WAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASGKREREL 94

Query: 264 EPRESG 281
           E   SG
Sbjct: 95  ERSGSG 100


>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
          Length = 135

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 147 VHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDMLTVE---PRESGGSKQC 296
           + +L +  G AK     +   A +  ++LA  G   + V    PR+SGGS++C
Sbjct: 80  MESLWKVVGAAKHGGGPVAAMARQLPSALATLGAATVPVGASGPRDSGGSRRC 132


>05_02_0165 - 7256178-7256444
          Length = 88

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 108 LLSTRRNRSFGHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDMLTVEPRE 275
           L S  R+ S G    A+G+       P+ GLC     +E  + E+GK   T   R+
Sbjct: 19  LASQPRHWSAGLAARAVGQRCSDLCQPARGLCTCIKPSEQRVREAGKHPGTARYRK 74


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 195 PRMVASHHRPLGRVHEP 145
           P  VA+H RPLG +H P
Sbjct: 36  PPTVATHTRPLGIIHPP 52


>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
          Length = 871

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 222 RPXRRSGIIPRMVASHHRPLGRVHEPNVRNCGSSSY*AVLLSQRQAISR 76
           +P R+  +    VA       R HE    + GSSS  A ++ +R+A+++
Sbjct: 402 KPARKEEVAEVNVARREEATKRKHEQASSSLGSSSSAAKVIHRRKAVTK 450


>09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356
          Length = 292

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 59  RQVSFTLLMACRCDSNTAQYEEEPQFRTFGSCTRPSGRWCEAT 187
           R   + LL   RCD+   + EEE +   +  CTR S RW   T
Sbjct: 62  RAEPWDLLPPPRCDAAAEEEEEEEERCGYFFCTR-SFRWPSGT 103


>03_05_1088 + 30301654-30303480
          Length = 608

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 162 RAAGGAKLPSAGLCLNAXKAEASLAESGKDMLTVEPRESGG 284
           R+  G+ L ++  C N   AE +     K++L +EP E GG
Sbjct: 532 RSIWGSILSASSACQNTEVAEIA----SKELLCLEPAEEGG 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,495,305
Number of Sequences: 37544
Number of extensions: 156310
Number of successful extensions: 423
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)