Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32045
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   3.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   5.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 ALGRAAGGAKLPSAGLCLNAXKAEASL 233
           ALGR AGG    S+ L L+     +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 ALGRAAGGAKLPSAGLCLNAXKAEASL 233
           ALGR AGG    S+ L L+     +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 ALGRAAGGAKLPSAGLCLNAXKAEASL 233
           ALGR AGG    S+ L L+     +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 ALGRAAGGAKLPSAGLCLNAXKAEASL 233
           ALGR AGG    S+ L L+     +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 176 TTGRSAECMNQMSETAVPPRTEQYYYRNDKPS 81
           T G   EC+    + AV  + E+     DKP+
Sbjct: 249 TVGMRPECVVPEYQCAVKRKEEKAQKEKDKPN 280


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 204 GIIPRMVASHHRPLGRVHEPNVR 136
           G I  ++AS HR L      NVR
Sbjct: 219 GRISCVIASRHRNLEATESENVR 241


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 89  CRCDSNTAQYEEEPQFRTFGSCTRP 163
           CRCD    + E++P+      CT+P
Sbjct: 296 CRCDPGYFRAEKDPKKM---PCTQP 317


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 132 SFGHLVHALGRAAGGAKLPSAG 197
           S   LV A+   AGG   PSAG
Sbjct: 393 SMSALVSAVRSPAGGQLPPSAG 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,001
Number of Sequences: 438
Number of extensions: 1276
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)