Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32045
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27670.1 68418.m03317 histone H2A, putative similar to histon...    31   0.27 
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    27   3.3  
At1g14740.1 68414.m01762 expressed protein                             26   5.7  
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ...    25   10.0 
At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa...    25   10.0 
At2g30220.1 68415.m03676 GDSL-motif lipase/hydrolase family prot...    25   10.0 
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    25   10.0 

>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
           H2A Lycopersicon esculentum SP|P25469, Pisum sativum
           SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
           profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 150

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 105 ILLSTRRNRSFGHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDMLTVEPRES 278
           + L+ R +   G L+H +  A+GG  LP+    L   K+ AS +++ K   T  P+++
Sbjct: 94  LCLAIRNDEELGRLLHGVTIASGGV-LPNINPVLLPKKSTASSSQAEKASATKSPKKA 150


>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 113 QYEEEPQFRTFGSCTRPSGRWCEATIRGIMPER 211
           +Y++ P F ++G        WCEA    + PE+
Sbjct: 564 RYDDHPLFLSYGEMGVAGKYWCEACETTVNPEK 596


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 174 GAKLPSAGLCLNAXKAEASLAESGKDMLTVEPRESGGSK 290
           G +L  + LC N+ K   SL + GK+++T     S   K
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDK 105


>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 425

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 39  AGFRPS*DRLVLPY*WLVVAIVILLSTRRNRSFGHLVH 152
           AG R S  R++L + W     + + + R NR+ GHLV+
Sbjct: 269 AGHRNSKIRVILAHVWENDTELDISNNRINRATGHLVY 306


>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
           family protein (ATL6) contains Pfam profile: PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 398

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 127 FLLVLSSITIATTSHQ*GKTN--LSHDGLNPAHVXLLM 20
           FLL+LSS  +A +  Q G TN   ++  L+PA   +++
Sbjct: 17  FLLILSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVV 54


>At2g30220.1 68415.m03676 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 358

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 74  TLLMACRCDSNTAQYEEEPQFRTFGSCTRPSG 169
           TLL++C  D+NT Q    P    FG  T  +G
Sbjct: 15  TLLVSCNADANTTQ-PLFPAILIFGDSTADTG 45


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 132 SFGHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDM 254
           S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 21  SIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,475,034
Number of Sequences: 28952
Number of extensions: 112295
Number of successful extensions: 259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)