Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32043
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   159   1e-40
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    97   1e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    90   1e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    82   3e-17
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   2.2  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.0  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    24   8.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  159 bits (387), Expect = 1e-40
 Identities = 67/96 (69%), Positives = 79/96 (82%)
 Frame = +2

Query: 128 IGAKFWEIICDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDS 307
           +GA FW  I DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYVPRA+LVDLEPGTMD+
Sbjct: 16  VGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDA 75

Query: 308 VRSGPFGQIXRXDNLVXGQXGAGNNWAKGHYTEGAE 415
           V+SG FG + R DN++ GQ GAGN WAKGHYTEGAE
Sbjct: 76  VKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAE 111


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
 Frame = +2

Query: 116 AATXIGAKFWEIICDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGKYVPRAILVDLE 289
           A T IG   WE+ C EHGI P G  + ++  Q      + +++E   GKYVPR+I VDLE
Sbjct: 12  AGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLE 71

Query: 290 PGTMDSVRSGPFGQIXRXDNLVXGQXGAGNNWAKGHYTEGAE 415
           P  +D VR+GP+  +   + L+ G+  A NN+A+GHYT G E
Sbjct: 72  PNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
 Frame = +2

Query: 116 AATXIGAKFWEIICDEHGIDPTG------AYHGDSDLQLERINVYYNEASGGKYVPRAIL 277
           A   IG   WE+ C EHGI P G        H ++    +    +++E   GK+VPR+I 
Sbjct: 12  AGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIY 71

Query: 278 VDLEPGTMDSVRSGPFGQIXRXDNLVXGQXGAGNNWAKGHYTEGAE 415
           VDLEP  +D VR+GP+  +   + +V G+  A NN+A+GHYT G E
Sbjct: 72  VDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 34/92 (36%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
 Frame = +2

Query: 128 IGAKFWEIICDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDS 307
           IG++FW+ +C EHGI P G     +   ++R +V++ ++   +Y+PRAIL+DLEP  +++
Sbjct: 17  IGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNN 76

Query: 308 VRSGPFGQIXRXDNLVXGQ--XGAGNNWAKGH 397
           + S  +G +   +N++  +   GAGNNWA G+
Sbjct: 77  ILSDTYGSLYNPENILITKNGGGAGNNWANGY 108


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 415 LSTLRVVSLGPVVAGAXLSXHQVVRTXDLSERSRADR 305
           +S L + S  P       S H+VV + DLSE    DR
Sbjct: 387 ISCLHIPSTTPRERNVETSLHKVVSSLDLSEEISPDR 423


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 74  KQNEGNRTYXKLVNAATXIGAKFWEIICDEHGIDPTGAYHG 196
           +++ G   +   ++A   +GA  W ++ DE G  P+    G
Sbjct: 421 EKDRGGAGFLTFLSAIFILGASIWALVEDEEGKIPSRGKKG 461


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +2

Query: 74  KQNEGNRTYXKLVNAATXIGAKFWEIICDEHGIDPTGAYHGDSDLQLERI 223
           ++ + + T   L +    +G    E++ ++  +DPT A   + DLQ++ +
Sbjct: 117 RRGKRSSTVDALNDELNELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,356
Number of Sequences: 5004
Number of extensions: 23883
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)