Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32039
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5M4L8 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_Q22B64 Cluster: Cyclic nucleotide-binding domain contai...    32   8.9  

>UniRef50_Q5M4L8 Cluster: Putative uncharacterized protein; n=1;
           Streptococcus thermophilus LMG 18311|Rep: Putative
           uncharacterized protein - Streptococcus thermophilus
           (strain ATCC BAA-250 / LMG 18311)
          Length = 81

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 392 PSYLITLSIKKKTHQNPLRSLKDLSIHRERYRDR 291
           P+Y+IT S KKKT++ P + LK     +  Y+++
Sbjct: 47  PTYIITNSFKKKTNKTPSKELKKAIKRKSNYKNK 80


>UniRef50_Q22B64 Cluster: Cyclic nucleotide-binding domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Cyclic nucleotide-binding domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1336

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 68  VNVSVNTGYYKL*METLLTLWFNEWKTIFCMWFHTND*TRIHLNEKYIYIIEFHRCNCCV 247
           V + +   Y+K   +T     ++EW+ I   W   ND       E+YI  I F   + C 
Sbjct: 384 VRMRIYEKYFKEKFKTNFITIYSEWQGIQNNWLRQNDLLNTSAGEQYINSIYFTMISMCT 443

Query: 248 IFT*SLHSI 274
           I    +H +
Sbjct: 444 IGYGDIHPL 452


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 463,313,940
Number of Sequences: 1657284
Number of extensions: 8571520
Number of successful extensions: 19521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19515
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)