Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32039
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    30   0.18 
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   6.7  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   8.9  
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.9  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = -2

Query: 443 NLLLISSLFNGCYYTYKPSYLITLSIKKKTHQNPLRSLKDLSIHRERYR-DRESDFVLYY 267
           N++    + +G  Y       + L+++K+   N   +L DL I R   + D++S+FVLY 
Sbjct: 173 NIVHEEDVVHGSDYLTNVFIAVPLNLEKQ-FLNSYETLTDLVIPRSAKKLDQDSEFVLYT 231

Query: 266 VVIK*ISRNNYIYETR 219
           VV+   + +++I + R
Sbjct: 232 VVVFKKTADSFITKAR 247


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 248 SRNNYIYETRLCICIFRSDEFSSNRSY 168
           ++N Y  +T+ CI  FR++ F     Y
Sbjct: 362 AQNAYALDTKSCIADFRTNSFVGTEEY 388


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -3

Query: 247  HATITSMKLDYVYVFFVQMNSRLIVR 170
            HA++  +KLDY+     ++N ++++R
Sbjct: 1021 HASVKFLKLDYLRSLMNKLNLKIVMR 1046


>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 144

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 344 PLRSLKDLSIHRERYRDRESDFVLYYVVIK 255
           P +SL++ S       DRES F+ Y+V  K
Sbjct: 20  PKQSLQECSYMSNLITDRESTFLSYFVPSK 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,382
Number of Sequences: 5004
Number of extensions: 40766
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)