Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32039
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         28   5.3  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         28   5.3  
SB_53368| Best HMM Match : CLN3 (HMM E-Value=1.4e-07)                  27   6.9  
SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 100 LVIASIDGHIDVIHTLINNGVIFRNT 23
           L+IA+ +GH DV+ TL+N G     T
Sbjct: 831 LIIAAQEGHSDVVITLLNFGTPINQT 856


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 100 LVIASIDGHIDVIHTLINNGVIFRNT 23
           L+IA+ +GH DV+ TL+N G     T
Sbjct: 27  LIIAAQEGHSDVVITLLNFGTPINQT 52


>SB_53368| Best HMM Match : CLN3 (HMM E-Value=1.4e-07)
          Length = 419

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 107 METLLTLWFNEWKTIFC 157
           ME+LLT W+N W+ + C
Sbjct: 1   MESLLT-WYNSWRNVLC 16


>SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 181 LIVRMKPHAKYCFPFIKPQG 122
           L+     H +YCFPF +P+G
Sbjct: 706 LLAHQITHFRYCFPFGRPEG 725


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 107  METLLTLWFNEWKTIFCMWFHTND*TRIHLNEKYIYIIE 223
            ME  L +W +  K++FC   H      +HL   + +II+
Sbjct: 918  MENKLNIWSSAGKSLFCDRLHLFQFFLVHLRLFFTFIIK 956


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,666
Number of Sequences: 59808
Number of extensions: 273546
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)