Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32039
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-contain...    27   5.7  
At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-contain...    27   7.5  
At2g20390.1 68415.m02380 expressed protein                             27   7.5  
At5g20450.1 68418.m02431 expressed protein weak similarity to my...    27   9.9  
At1g04390.1 68414.m00429 expressed protein                             27   9.9  

>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 1280

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 194  LNEKYIYIIEFHRCNCCVIFT*SLHSIKQSRFLCPYIFPYVCL 322
            + EKY  ++EF +  CCVIF  S +  +   F C Y  P   L
Sbjct: 1025 MQEKY-QVMEFQQRKCCVIFELSSNLARVLEF-CTYAMPQAFL 1065


>At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 737

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 115 CFHLKLVIASIDGHIDVIH 59
           CF+   V+  +DGH D+IH
Sbjct: 235 CFYQGSVVEHLDGHTDIIH 253


>At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF00169: Pleckstring homology
           (PH) domain, PF01852: Lipid-binding START domain
          Length = 733

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 115 CFHLKLVIASIDGHIDVIH 59
           CF+   V+  +DGH D+IH
Sbjct: 241 CFYKGNVVEHLDGHTDIIH 259


>At2g20390.1 68415.m02380 expressed protein
          Length = 183

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 190 NSRLIVRMKPHAKYC-FPFIKPQG*QCFHLKLV 95
           N+ L V  + H+  C FP I PQG    HLK V
Sbjct: 87  NASLAVSHQRHSVSCSFPVIGPQGTGILHLKAV 119


>At5g20450.1 68418.m02431 expressed protein weak similarity to
           myosin [Arabidopsis thaliana] GI:433663
          Length = 341

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -3

Query: 223 LDYVYVFFVQMNSRLIVRMKPHAKYC----FPFIKPQG*QCFHLKLVIASIDGHIDVI 62
           +D++   +  M   L   + PH +YC    +PF  P+  +  H + ++ S+  +++++
Sbjct: 275 IDFLQKIYGMMRDNLKKEILPHLEYCKQAPWPFSNPKE-RIVHWQRIVGSLRSYLNIM 331


>At1g04390.1 68414.m00429 expressed protein
          Length = 849

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 223 LDYVYVFFVQMNSRLIVRMKPHAKYC 146
           L++ Y  +V++ S  + ++KP AK+C
Sbjct: 593 LEFAYSGYVEVESTTLKKLKPLAKHC 618


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,954
Number of Sequences: 28952
Number of extensions: 189595
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)